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AT2G25490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.958
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EIN3-binding F box protein 1
Curator
Summary (TAIR10)
Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.
Computational
Description (TAIR10)
EIN3-binding F box protein 1 (EBF1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 13069 Blast hits to 4728 proteins in 296 species: Archae - 0; Bacteria - 528; Metazoa - 5097; Fungi - 1628; Plants - 4199; Viruses - 9; Other Eukaryotes - 1608 (source: NCBI BLink).
Protein Annotations
BioGrid:2439DIP:DIP-31329NeggNOG:ENOG410IT20eggNOG:ENOG410XPA4EMBL:AC006300EMBL:AJ609238EMBL:AK229995
EMBL:AK317560EMBL:AY072205EMBL:AY091333EMBL:CP002685EnsemblPlants:AT2G25490EnsemblPlants:AT2G25490.1entrez:817087
Gene3D:3.80.10.10GeneID:817087Genevisible:Q9SKK0GO:GO:0005634GO:GO:0006511GO:GO:0009723GO:GO:0009873
GO:GO:0010105GO:GO:0016567Gramene:AT2G25490.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF389HOGENOM:HOG000238885InParanoid:Q9SKK0
IntAct:Q9SKK0InterPro:IPR001611InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT2G25490KO:K14515
OMA:ISKCAISPaxDb:Q9SKK0Pfam:PF12937Pfam:PF13516Pfam:Q9SKK0PhylomeDB:Q9SKK0PIR:A84649
PRIDE:Q9SKK0PRO:PR:Q9SKK0ProteinModelPortal:Q9SKK0Proteomes:UP000006548RefSeq:NP_565597.1SMART:SM00256SMART:SM00367
SMR:Q9SKK0STRING:3702.AT2G25490.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT2G25490tair10-symbols:EBF1tair10-symbols:FBL6
UniGene:At.24288UniGene:At.67740UniPathway:UPA00143UniProt:Q9SKK0
Coordinates (TAIR10) chr2:-:10848018..10850275
Molecular Weight (calculated) 66592.70 Da
IEP (calculated) 7.62
GRAVY (calculated) 0.21
Length 628 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)