suba logo
AT2G25420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.685
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP3KeggNOG:KOG0266EMBL:AK226678EMBL:CP002685EnsemblPlants:AT2G25420EnsemblPlants:AT2G25420.1entrez:817080
Gene3D:2.130.10.10GeneID:817080GO:GO:0006355Gramene:AT2G25420.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF499HOGENOM:HOG000120706
InterPro:IPR001680InterPro:IPR006594InterPro:IPR006595InterPro:IPR015943InterPro:IPR017986InterPro:IPR024977InterPro:IPR027728
KEGG:ath:AT2G25420KO:K14558OMA:ATHKLWTPANTHER:PTHR22847:SF499Pfam:PF12894Pfscan:PS50082Pfscan:PS50294
Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q0WVR3PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896PROSITE:PS50897
Proteomes:UP000006548RefSeq:NP_565594.3SMART:SM00320SMART:SM00667SMART:SM00668SMR:Q0WVR3STRING:3702.AT2G25420.1
SUPFAM:SSF50978TAIR:AT2G25420UniGene:At.23385UniProt:Q0WVR3
Coordinates (TAIR10) chr2:+:10817017..10820919
Molecular Weight (calculated) 83164.40 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.22
Length 740 amino acids
Sequence (TAIR10)
(BLAST)
001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKENV YPKPRLHQPQ SGKTMENEMA TSVQKSTSCF AVKGSYLFST SGGKIAVFDL KNFEKVASFG SPTPMATYFI
501: FIPGDLLAVG LDDGSIFIHC LSSRKVKEKL EGHDQKITCL AFSRCFNVLV SSDSDGKLCL WSTKSWVKLT SKNSTRKFCN RSNLESTSLV THIQFDPYQI
601: ELLVVHDGWI GLYEVRTLDC RLQWIPDASD PAITSATYSS DGEIIYVGFR CGSIKIVDSK TFMTLCQINL TSFTQLSTSN ISLEVYPTVV AAHPSHPNQI
701: SAGLSNGKVI VLQPLWSGGW GEAAPLEDNG DYSNDSDHSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)