AT2G25350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phox (PX) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 23905 Blast hits to 15623 proteins in 1176 species: Archae - 308; Bacteria - 2272; Metazoa - 12562; Fungi - 2077; Plants - 1184; Viruses - 165; Other Eukaryotes - 5337 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10797599..10800756 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72827.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 643 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRRSPPKHR HDGASPLPLG MDWSPPPRNW NGRDTIWPHD FRTGWSYCVT IPSWTLLSKS KNSDPIVFYR VQVSVQSPEG VSTMRGILRR FNDFVKLLAD 101: LKRAFPRKSF PSAPPKGFLR VKSRDMLEER RCSLEDWMTK LLSDIELARS VVVASFLELE ATARSACQVV DQNASDSNDD GNSTSLSSLV HPNSGGSSLL 201: SSDYGSDTAY ETSELGSASL GQDDVSETDT GDLTLDEDLT NPTEKLVKFS MSNIDEGLSM SQTIIEQLED FPKHRVHLGY ANDITETNSY NGKASKGVFR 301: ANNDLRCRSE SETSHSVMHD RKLSLESADG VSLLAGETST SSILSSIVHS QLDVNHDISV GNLEIPGNGR IVLPLKMHSK LNRILLTMNE RLLNSKTDME 401: DLIARLNQET AVKEYLNRKV DDLEVELETT KQRNKENLEQ ALMTERQSVT KMQWDMEELR QKTFEMELKL KSKEDGSSDS KTSGNSTISE SHELLQEMDA 501: TKQQLEDLSR RYVELEAKSK ADIKVLVREV KSLRRSHMEM EKELTRSLTE KSDTEKLLQQ ERIIVENTLE ARRRLYSDCE ILHDRLKVNN TNLSMDESSN 601: NREDLSEVSN ALQDQIEAQL LLGFDETASE DELRKIMADM YED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)