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AT2G25340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15342965 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vesicle-associated membrane protein 712
Curator
Summary (TAIR10)
Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
Computational
Description (TAIR10)
vesicle-associated membrane protein 712 (VAMP712); INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: vacuolar membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2449 Blast hits to 2448 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 945; Fungi - 513; Plants - 550; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5143eggNOG:KOG0859EMBL:AC007070EMBL:CP002685EnsemblPlants:AT2G25340EnsemblPlants:AT2G25340.1entrez:817072
Gene3D:1.10.3840.10Gene3D:3.30.450.50GeneID:817072Genevisible:Q9SIQ9GO:GO:0000149GO:GO:0005484GO:GO:0005774
GO:GO:0006906GO:GO:0015031GO:GO:0016021GO:GO:0031902Gramene:AT2G25340.1hmmpanther:PTHR21136hmmpanther:PTHR21136:SF104
HOGENOM:HOG000042711InParanoid:Q9SIQ9InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012KEGG:ath:AT2G25340KO:K08515
OMA:CMADEDAPaxDb:Q9SIQ9Pfam:PF00957Pfam:PF13774Pfam:Q9SIQ9Pfscan:PS50859Pfscan:PS50892
PhylomeDB:Q9SIQ9PIR:C84647PRIDE:Q9SIQ9PRINTS:PR00219PRO:PR:Q9SIQ9PROSITE:PS00417PROSITE:PS50859
PROSITE:PS50892ProteinModelPortal:Q9SIQ9Proteomes:UP000006548RefSeq:NP_180106.1scanprosite:PS00417SMART:SM01270SMR:Q9SIQ9
STRING:3702.AT2G25340.1SUPFAM:SSF58038SUPFAM:SSF64356TAIR:AT2G25340tair10-symbols:ATVAMP712tair10-symbols:VAMP712TMHMM:TMhelix
UniGene:At.52906UniProt:Q9SIQ9
Coordinates (TAIR10) chr2:-:10792664..10793832
Molecular Weight (calculated) 24967.10 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.13
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR YVFHVKRTDG LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA
101: YAMNDEFSRV LNQQIEYYSN DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN NTVWWRNCKL TLLLILVLLV
201: IIYIGVAFAC HGPTLPSCV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)