suba logo
AT2G25280.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
Protein Annotations
DNASU:817066eggNOG:COG1355eggNOG:KOG3086EMBL:AC007070EMBL:AY059726EMBL:AY086440EMBL:AY091357
EMBL:CP002685EnsemblPlants:AT2G25280EnsemblPlants:AT2G25280.1entrez:817066GeneID:817066Gramene:AT2G25280.1HAMAP:MF_00055
hmmpanther:PTHR11060hmmpanther:PTHR11060:SF0HOGENOM:HOG000225260IntAct:Q9SIR5InterPro:IPR002737KEGG:ath:AT2G25280KO:K06990
OMA:HLPYIYKPANTHER:PTHR11060Pfam:PF01875PhylomeDB:Q9SIR5PIR:E84646Proteomes:UP000006548RefSeq:NP_565590.1
SMR:Q9SIR5STRING:3702.AT2G25280.1TAIR:AT2G25280TIGRfam:TIGR04336TIGRFAMs:TIGR04336UniGene:At.14341UniGene:At.47852
UniGene:At.68422UniProt:Q9SIR5
Coordinates (TAIR10) chr2:-:10762639..10764631
Molecular Weight (calculated) 32645.90 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.31
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKIRQPTHA GSWYTDNPTK LSSDLEEWLN ATGLTKSPDV RGVIAPHAGY SYSGRAAAYA FANIDPTNIS RIFLLGPSHH FYTPKCALST ATVYKTPIGN
101: LPVDVEMIKE IRAMGKFGMM DLRVDEAEHS MEMHLPYLAK VFEGNNVKVV PILVGAVSPE NEAMYGELLA KYVDDPKNFF SVSSDFCHWG SRFNYMHYDN
201: THGAIHKSIE ALDKKGMDII ETGDPDAFKK YLLEFENTIC GRHPISIFLH MLKHSSSKIK INFLRYEQSS QCQTMRDSSV SYASAAAKLE T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)