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AT2G25000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 60
Curator
Summary (TAIR10)
Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational
Description (TAIR10)
WRKY DNA-binding protein 60 (WRKY60); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.1); Has 3263 Blast hits to 2826 proteins in 197 species: Archae - 14; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3232; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
EMBL:AK227987EnsemblPlants:AT2G25000EnsemblPlants:AT2G25000.1entrez:817039ExpressionAtlas:Q0WSE5Gene3D:2.20.25.80GeneID:817039
GO:GO:0003700GO:GO:0043565Gramene:AT2G25000.1hmmpanther:PTHR31429hmmpanther:PTHR31429:SF13InterPro:IPR003657KEGG:ath:AT2G25000
ncoils:CoilOMA:HTGPHASPaxDb:Q0WSE5Pfam:PF03106Pfam:Q9SK33Pfscan:PS50811PhylomeDB:Q0WSE5
PRIDE:Q0WSE5PROSITE:PS50811ProteinModelPortal:Q0WSE5RefSeq:NP_180072.1SMART:SM00774SMR:Q0WSE5STRING:3702.AT2G25000.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT2G25000tair10-symbols:ATWRKY60tair10-symbols:WRKY60UniGene:At.28320UniProt:Q0WSE5
UniProt:Q9SK33
Coordinates (TAIR10) chr2:+:10629812..10631095
Molecular Weight (calculated) 30579.20 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.73
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)