AT2G24960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10617263..10620034 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 92537.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||
| Length | 797 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNQTTCNDR TRTYWTPTME RFFIDLMLEH LHRGNRTGHT FNKQAWNEML TVFNSKFGSQ YDKDVLKSRY TNLWKQYNDV KCLLDHGGFV WDQTHQTVIG 101: DDSLWSLYLK AHPEARVYKT KPVLNFSDLC LIYGYTVADG RYSMSSHDLE IEDEINGESV VLSGKESSKT EWTLEMDQYF VEIMVDQIGR GNKTGNAFSK 201: QAWIDMLVLF NARFSGQYGK RVLRHRYNKL LKYYKDMEAI LKEDGFSWDE TRLMISADDA VWDSYIKDHP LARTYRMKSL PSYNDLDTIF ACQAEQGTDH 301: RDDGSAAQTS ETKASQEQNS DRTRIFWTPP MDYHLIDLLV EQVNNGNRVG QTFITSAWNE MVTAFNAKFG SQHNKDVLKN RYKHLRRLYN DIKFLLEQNG 401: FSWDARRDMV IADDDIWNTY IQACHILFLF KISVICLCLQ MKHVQAHPEA RSYRVKTIPS YPNLCFIFGK ETSDGRYTRL AQAFDPSPAE TVRMNESGST 501: DGFKDTRSFQ KVVYTSNEKN DYPCSNIGPP CIEWTRVMDH CLIDLMLEQV SRGNKIGETF TEQAWADMAE SFNAKFGLQT DMFMLENRYI LLMKERDDIN 601: NILNLDGFTW DVEKQTIVAE DEYWEAYIKE HPDATIYKGK TLDSYGNLCK LNEHLSQESF NCENLMIELE NYGNEMEIVD DFSSPHKQQN KRPNPITPPL 701: GIVVCKAQKT GVETRKPLCE TEGDDDDCTK PMPQIEIYSR IGNALDALQA LPDMDDELLL DACDLLEDER KAKTFLALDV SLRRKWLVRK LRPSANV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)