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AT2G24840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 61
Curator
Summary (TAIR10)
Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.
Computational
Description (TAIR10)
AGAMOUS-like 61 (AGL61); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 62 (TAIR:AT5G60440.1); Has 5781 Blast hits to 5781 proteins in 683 species: Archae - 0; Bacteria - 0; Metazoa - 624; Fungi - 302; Plants - 4788; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
BioGrid:2373eggNOG:COG5068eggNOG:KOG0014EMBL:AC006585EMBL:CP002685EMBL:DQ056542EMBL:EU836691
EnsemblPlants:AT2G24840EnsemblPlants:AT2G24840.1entrez:817021GeneID:817021Genevisible:Q4PSU4GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009559GO:GO:0043078Gramene:AT2G24840.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF185
HOGENOM:HOG000238700InParanoid:Q4PSU4IntAct:Q4PSU4InterPro:IPR002100KEGG:ath:AT2G24840OMA:IPMVKIKPaxDb:Q4PSU4
Pfam:PF00319Pfam:Q4PSU4Pfscan:PS50066PhylomeDB:Q4PSU4PIR:B84641PRIDE:Q4PSU4PRINTS:PR00404
PRO:PR:Q4PSU4PROSITE:PS50066ProteinModelPortal:Q4PSU4Proteomes:UP000006548RefSeq:NP_850058.1SMART:SM00432SMR:Q4PSU4
STRING:3702.AT2G24840.1SUPFAM:SSF55455TAIR:AT2G24840tair10-symbols:AGL61tair10-symbols:DIAUniGene:At.52900UniProt:Q4PSU4
Coordinates (TAIR10) chr2:+:10581082..10581876
Molecular Weight (calculated) 30266.00 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.51
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)