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AT2G24600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.701
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 23294 Blast hits to 11989 proteins in 581 species: Archae - 40; Bacteria - 1638; Metazoa - 13006; Fungi - 1656; Plants - 2370; Viruses - 127; Other Eukaryotes - 4457 (source: NCBI BLink).
Protein Annotations
EMBL:AC006954EMBL:AY056204EMBL:AY096459EMBL:CP002685EnsemblPlants:AT2G24600EnsemblPlants:AT2G24600.1EnsemblPlants:AT2G24600.2
entrez:816996ExpressionAtlas:Q9SJA5Gene3D:1.25.40.20GeneID:816996GO:GO:0016021Gramene:AT2G24600.1Gramene:AT2G24600.2
hmmpanther:PTHR24177hmmpanther:PTHR24177:SF18HOGENOM:HOG000131723InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961Pfam:PF12796
Pfam:PF13637Pfam:PF13962Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9SJA5PIR:F84638PROSITE:PS50088
PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_565575.1RefSeq:NP_850055.2SMART:SM00248SMR:Q9SJA5SUPFAM:SSF48403
TAIR:AT2G24600TMHMM:TMhelixUniGene:At.26359UniProt:Q9SJA5
Coordinates (TAIR10) chr2:-:10452430..10454414
Molecular Weight (calculated) 60646.10 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.12
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MHPIFDAILQ NDLPAFLGLV EARESSLEER SEEQNTNNTV LHVAAKLGHR ELVAKIIELR PSLLSSRNAY GDTPLHLAAL LGDVNIVMQM LDTGLELYSA
101: RNNKNQTPLH LAFVSIFMEA AKFIVEKTNS VDLDELNFAL SSGSTCIVGI ILERFPELAR KNAWEVEDGS RSTLLHYACD KGDLELTSIL LGLNQGLEEA
201: LNSKGLSPLH LAVQRGSVII LEEFMDKSPL SFCVRTPSKE TVFHLAARNK NTDAFVFMAE NLGTSSPILL KKKDQQGNTV LHIAASVSCG SPLIRYIVGK
301: KIIDIRDRNN MGYRAYHLLP RQAQDYEFIS SYLRCDTKTS EEVDSKKAER NEPHIGHSEV IRLLKLIEIS TSEIAERKKS KKHHVKRGHK SLEHEMHIEA
401: LQNARNTIAI VAVLIASVSY AGGINPPGGV YQDGPWKGKS LVGFMATAYV AASLVTIPHF PGTRWLFPVI ISVAGGSLTV LFSYLGVETI SHWFKKMNRV
501: GRGLPIYFIK NNRVEDIPAI AKNEGEMPSL ARTNSDLAAS EGSGYFTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)