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AT2G24550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG4210EMBL:AF411794EMBL:AY099874
EMBL:BT000317EMBL:CP002685EnsemblPlants:AT2G24550EnsemblPlants:AT2G24550.1
entrez:816991GeneID:816991Gramene:AT2G24550.1hmmpanther:PTHR33172
hmmpanther:PTHR33172:SF15HOGENOM:HOG000148651IntAct:Q945P6KEGG:ath:AT2G24550
OMA:EPNEEDHPhylomeDB:Q945P6Proteomes:UP000006548RefSeq:NP_565573.4
STRING:3702.AT2G24550.1TAIR:AT2G24550UniGene:At.22389UniProt:Q945P6
Coordinates (TAIR10) chr2:-:10428060..10429051
Molecular Weight (calculated) 27248.20 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.97
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)