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AT2G24540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATTENUATED FAR-RED RESPONSE (AFR); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G30090.1); Has 5748 Blast hits to 4112 proteins in 230 species: Archae - 6; Bacteria - 427; Metazoa - 4034; Fungi - 29; Plants - 1071; Viruses - 14; Other Eukaryotes - 167 (source: NCBI BLink).
Protein Annotations
BioGrid:2342eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC006954EMBL:AY072009EMBL:AY087570EMBL:BT000847
EMBL:CP002685EnsemblPlants:AT2G24540EnsemblPlants:AT2G24540.1entrez:816990Gene3D:2.130.10.80GeneID:816990Genevisible:Q8LAW2
GO:GO:0009585GO:GO:0010017GO:GO:0016567Gramene:AT2G24540.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF31HOGENOM:HOG000242138
InParanoid:Q8LAW2IntAct:Q8LAW2InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT2G24540OMA:RWFVLPP
PaxDb:Q8LAW2Pfam:PF00646Pfam:PF01344Pfam:Q8LAW2PhylomeDB:Q8LAW2PIR:H84637PRIDE:Q8LAW2
PRO:PR:Q8LAW2ProteinModelPortal:Q8LAW2Proteomes:UP000006548RefSeq:NP_565572.1SMART:SM00256SMART:SM00612SMR:Q8LAW2
STRING:3702.AT2G24540.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT2G24540tair10-symbols:AFRUniGene:At.22510UniGene:At.28274
UniPathway:UPA00143UniProt:Q8LAW2
Coordinates (TAIR10) chr2:+:10426414..10427532
Molecular Weight (calculated) 41280.00 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.23
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)