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AT2G24500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger protein 622
Curator
Summary (TAIR10)
Encodes a C2H2 zinc finger protein FZF.
Computational
Description (TAIR10)
FZF; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT4G31420.1); Has 877 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 284; Plants - 90; Viruses - 2; Other Eukaryotes - 142 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPH0eggNOG:KOG2785EMBL:AC006403EMBL:AF095588
EMBL:AY062620EMBL:AY114695EMBL:CP002685EnsemblPlants:AT2G24500
EnsemblPlants:AT2G24500.1entrez:816986GeneID:816986GO:GO:0003700
GO:GO:0006355GO:GO:0022625GO:GO:0030687GO:GO:0042273
GO:GO:0046872Gramene:AT2G24500.1hmmpanther:PTHR13182HOGENOM:HOG000183078
IntAct:Q9ZQ18InterPro:IPR003604InterPro:IPR007087InterPro:IPR015880
InterPro:IPR022755KEGG:ath:AT2G24500KO:K14816OMA:DAEMNED
PaxDb:Q9ZQ18Pfam:PF12171Pfam:PF12756PhylomeDB:Q9ZQ18
PIR:T52423PROSITE:PS00028ProteinModelPortal:Q9ZQ18Proteomes:UP000006548
RefSeq:NP_180026.1scanprosite:PS00028SMART:SM00355SMART:SM00451
SMR:Q9ZQ18STRING:3702.AT2G24500.1SUPFAM:SSF57667TAIR:AT2G24500
tair10-symbols:FZFUniGene:At.11089UniProt:Q9ZQ18
Coordinates (TAIR10) chr2:-:10401259..10402805
Molecular Weight (calculated) 44989.30 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.72
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLACNSCN KDFEDDAEQK FHYKSEWHRY NLKRKIAGVP GVTEALFEAR QAAIAQEKVK AVEAPMLYSC GICNKGYRSS KAHEQHLKSK SHVLKASTST
101: GEEDKAIIKQ LPPRRVEKNN TAQLKGSIEE EESEDEWIEV DSDEDLDAEM NEDGEEEDMD EDGIEFELDP ACCLMCDKKH KTIEKCMVHM HKFHGFFIPD
201: IEYLKDPKGF LTYLGLKVKR DFVCLYCNEL CHPFSSLEAV RKHMDAKGHC KVHYGDGGDE EDAELEEFYD YSSSYVNGDE NQMVVSGESV NTVELFGGSE
301: LVITKRTDNK VTSRTLGSRE FMRYYKQKPA PSSQKHIVNS LTSRYKMMGL ATVQSKEAIV RMKVMREMNK RGAKSSVRLG MKSNVIRNLP NNVTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)