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AT2G24450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 3 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 3 precursor (FLA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 5 precursor (TAIR:AT4G31370.1); Has 10338 Blast hits to 6301 proteins in 702 species: Archae - 8; Bacteria - 2389; Metazoa - 2056; Fungi - 1063; Plants - 2613; Viruses - 640; Other Eukaryotes - 1569 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXZAeggNOG:ENOG410YHCUEMBL:AC006403EMBL:AK228445EMBL:AK229668EMBL:BT012135EMBL:BT012411
EMBL:CP002685EnsemblPlants:AT2G24450EnsemblPlants:AT2G24450.1entrez:816981Gene3D:2.30.180.10GeneID:816981Genevisible:Q9ZQ23
GO:GO:0005886GO:GO:0031225Gramene:AT2G24450.1hmmpanther:PTHR32382hmmpanther:PTHR32382:SF15HOGENOM:HOG000240695InParanoid:Q9ZQ23
InterPro:IPR000782InterPro:IPR033254KEGG:ath:AT2G24450OMA:NCTKSNGPANTHER:PTHR32382PaxDb:Q9ZQ23Pfam:PF02469
Pfam:Q9ZQ23Pfscan:PS50213PhylomeDB:Q9ZQ23PIR:G84636PRIDE:Q9ZQ23PRO:PR:Q9ZQ23PROSITE:PS50213
ProteinModelPortal:Q9ZQ23Proteomes:UP000006548RefSeq:NP_180021.1SMR:Q9ZQ23STRING:3702.AT2G24450.1SUPFAM:SSF82153TAIR:AT2G24450
tair10-symbols:FLA3TMHMM:TMhelixUniGene:At.39158UniGene:At.50589UniProt:Q9ZQ23
Coordinates (TAIR10) chr2:-:10393019..10393861
Molecular Weight (calculated) 29171.10 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.01
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLKVSSSLL CLTILLAVSS IVSAVNITRV LEKYPEFSTM TELLAKTELT PIINKRQTIT VLALNNDAIG SISGRPEEEV KNILMNHVVL DYFDELKLKA
101: LKEKSTLLTT LYQSTGLGQQ QNGFLNCTKS NGKIYFGSGV KGAPQTAEYI TTVFRNPYNL SVVQISMPIV APGLGSPVKV PPPPPMSSPP APSPKKGAAT
201: PAPAPADEGD YADAPPGLAP ETAPASAPSE SDSPAPAPDK SGKKKMAAAD EAEPPSSASN TGLSFGAVLV LGFVASFVGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)