suba logo
AT2G24430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 38
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 38 (NAC038); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 58 (TAIR:AT3G18400.1); Has 3031 Blast hits to 3023 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 3020; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKV8eggNOG:ENOG410Y9VPEMBL:AC006403EMBL:CP002685
EnsemblPlants:AT2G24430EnsemblPlants:AT2G24430.1EnsemblPlants:AT2G24430.2entrez:816979
GeneID:816979GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT2G24430.1Gramene:AT2G24430.2hmmpanther:PTHR31744
hmmpanther:PTHR31744:SF6HOGENOM:HOG000237406InterPro:IPR003441KEGG:ath:AT2G24430
OMA:NVEMSQCPfam:PF02365Pfscan:PS51005PhylomeDB:Q9ZQ25
PIR:E84636PROSITE:PS51005Proteomes:UP000006548RefSeq:NP_180019.1
RefSeq:NP_850054.1SMR:Q9ZQ25STRING:3702.AT2G24430.1SUPFAM:SSF101941
TAIR:AT2G24430tair10-symbols:ANAC038tair10-symbols:NAC038UniGene:At.39159
UniProt:Q9ZQ25
Coordinates (TAIR10) chr2:-:10383517..10386386
Molecular Weight (calculated) 35843.00 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.75
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT
101: GKDKEIFNST TSELVGMKKT LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISTSSSST SHHHNNHTRA SILSTNNNNP
201: NYSSDLLQLP PHLQPHPSLN INQSLMANAV HLAELSRVFR ASTSTTMDSS HQQLMNYTHM PVSGLNLNLG GALVQPPPVV SLEDVAAVSA SYNGENGFGN
301: VEMSQCMDLD GYWPSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)