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AT2G24280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21841088 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity, serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, lysosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT5G65760.1); Has 1253 Blast hits to 1217 proteins in 170 species: Archae - 0; Bacteria - 7; Metazoa - 611; Fungi - 189; Plants - 249; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G24280-MONOMEReggNOG:ENOG410Y38AeggNOG:KOG2183EMBL:AY058177EMBL:AY142011EMBL:CP002685EnsemblPlants:AT2G24280
EnsemblPlants:AT2G24280.1entrez:816963ESTHER:arath-At2g24280Gene3D:3.40.50.1820GeneID:816963GO:GO:0008236Gramene:AT2G24280.1
hmmpanther:PTHR11010hmmpanther:PTHR11010:SF31HOGENOM:HOG000238311InterPro:IPR008758InterPro:IPR029058KEGG:ath:AT2G24280KO:K01285
MEROPS:S28.A01OMA:MMPLPAYPfam:PF05577PhylomeDB:Q93Z34Proteomes:UP000006548RefSeq:NP_850050.1SMR:Q93Z34
SUPFAM:SSF53474TAIR:AT2G24280UniGene:At.13798UniProt:Q93Z34
Coordinates (TAIR10) chr2:+:10334622..10336927
Molecular Weight (calculated) 56236.00 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.32
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MSACLCLVFL FFSIVAEATY SPGGFHHLSS LRLKKKVSKS KHELPFETRY FPQNLDHFSF TPDSYKVFHQ KYLINNRFWR KGGPIFVYTG NEGDIDWFAS
101: NTGFMLDIAP KFRALLVFIE HRFYGESTPF GKKSHKSAET LGYLNSQQAL ADYAILIRSL KQNLSSEASP VVVFGGSYGG MLAAWFRLKY PHITIGALAS
201: SAPILHFDNI VPLTSFYDAI SQDFKDASIN CFKVIKRSWE ELEAVSTMKN GLQELSKKFR TCKGLHSQYS ARDWLSGAFV YTAMVNYPTA ANFMAPLPGY
301: PVEQMCKIID GFPRGSSNLD RAFAAASLYY NYSGSEKCFE MEQQTDDHGL DGWQYQACTE MVMPMSCSNQ SMLPPYENDS EAFQEQCMTR YGVKPRPHWI
401: TTEFGGMRIE TVLKRFGSNI IFSNGMQDPW SRGGVLKNIS SSIVALVTKK GAHHADLRAA TKDDPEWLKE QRRQEVAIIE KWISEYYRDL REEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)