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AT2G24260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LJRHL1-like 1
Curator
Summary (TAIR10)
Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).
Computational
Description (TAIR10)
LJRHL1-like 1 (LRL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair cell development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: LJRHL1-like 2 (TAIR:AT4G30980.1); Has 3384 Blast hits to 3378 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 13; Plants - 3219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJFPeggNOG:ENOG4111MVPEMBL:AC005967EMBL:AF488599EMBL:AK176370EMBL:AK176390EMBL:BT026512
EMBL:CP002685EnsemblPlants:AT2G24260EnsemblPlants:AT2G24260.1entrez:816961Gene3D:4.10.280.10GeneID:816961Genevisible:Q9ZUG9
GO:GO:0001046GO:GO:0001228GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366GO:GO:0045944
GO:GO:0048765GO:GO:0048767GO:GO:0080147Gramene:AT2G24260.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF28HOGENOM:HOG000239571
InParanoid:Q9ZUG9InterPro:IPR011598KEGG:ath:AT2G24260OMA:DHEDFLDPaxDb:Q9ZUG9Pfam:PF00010Pfam:Q9ZUG9
Pfscan:PS50888PhylomeDB:Q9ZUG9PIR:E84634PRIDE:Q9ZUG9PRO:PR:Q9ZUG9PROSITE:PS50888ProteinModelPortal:Q9ZUG9
Proteomes:UP000006548RefSeq:NP_180003.1SMART:SM00353SMR:Q9ZUG9STRING:3702.AT2G24260.1SUPFAM:SSF47459TAIR:AT2G24260
tair10-symbols:LRL1UniGene:At.20792UniProt:Q9ZUG9
Coordinates (TAIR10) chr2:-:10319646..10322177
Molecular Weight (calculated) 36524.00 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.36
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)