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AT2G24250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 154 Blast hits to 151 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:2311EMBL:AC005967EMBL:AY037201EMBL:BT003033EMBL:CP002685EnsemblPlants:AT2G24250EnsemblPlants:AT2G24250.1
EnsemblPlants:AT2G24250.2entrez:816959GeneID:816959Genevisible:Q9ZUH0Gramene:AT2G24250.1Gramene:AT2G24250.2hmmpanther:PTHR13710
hmmpanther:PTHR13710:SF86HOGENOM:HOG000112532InParanoid:Q9ZUH0IntAct:Q9ZUH0InterPro:IPR001810InterPro:IPR005174KEGG:ath:AT2G24250
OMA:EDDINCWPaxDb:Q9ZUH0Pfam:PF00646Pfam:PF03478Pfam:Q9ZUH0PhylomeDB:Q9ZUH0PIR:D84634
PRO:PR:Q9ZUH0ProteinModelPortal:Q9ZUH0Proteomes:UP000006548RefSeq:NP_001031407.1RefSeq:NP_565565.1SMR:Q9ZUH0SUPFAM:SSF81383
TAIR:AT2G24250UniGene:At.13407UniGene:At.67244UniProt:Q9ZUH0
Coordinates (TAIR10) chr2:-:10313436..10314560
Molecular Weight (calculated) 42363.60 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.19
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMKKKISTS SIMPDWSQLP EELLHIISTH LEDHYFDAVH ARSVCRSWRS TFPFPSSLLR QSYSLPAFPL ESKDLCCTLE KVPLFLFRVL TPPDAADASS
101: EYFLGGLGQD KSNDHVELPS PLQCSVKVNV PGTEPILMNM LDCQIIPLGH KYRLMIGCNP EEYSAAFLPL NEQGGGGEFV ALLDCTDLFL VLRSTEMRWI
201: RLEKPSTASC KELFTFRGRF YATFFNGDTF VIDPSSLEAT PLTPHIDSNF LVPSGNEELF LVKTDFLRCR VSRLDEEAAE WVEVSDLGDR VLFLGGHLGN
301: FYCSAKELPH GCGLTGDSIL FTVGSRNVTY PYKYGVHTNK RKAEDNINCW RSSRENRVLF RNRYDPVLSF RVER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)