suba logo
AT2G23940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF788)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF788); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT4G30500.1); Has 311 Blast hits to 311 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111RF3eggNOG:KOG3269EMBL:AC005170EMBL:AY102543EMBL:AY773850EMBL:CP002685EnsemblPlants:AT2G23940
EnsemblPlants:AT2G23940.1entrez:816926GeneID:816926GO:GO:0005783GO:GO:0005886GO:GO:0016021Gramene:AT2G23940.1
hmmpanther:PTHR13505hmmpanther:PTHR13505:SF7HOGENOM:HOG000230738IntAct:O82222InterPro:IPR008506KEGG:ath:AT2G23940OMA:IWSFWLL
PANTHER:PTHR13505Pfam:PF05620PhylomeDB:O82222PIR:F84630Proteomes:UP000006548RefSeq:NP_565558.1STRING:3702.AT2G23940.1
TAIR:AT2G23940TMHMM:TMhelixUniGene:At.61708UniProt:O82222
Coordinates (TAIR10) chr2:+:10184199..10185097
Molecular Weight (calculated) 19628.00 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.17
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)