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AT2G23930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : probable small nuclear ribonucleoprotein G
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1247 Blast hits to 1247 proteins in 267 species: Archae - 124; Bacteria - 0; Metazoa - 472; Fungi - 280; Plants - 197; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122Q1eggNOG:KOG1780EMBL:AC005170EMBL:AY088256EMBL:BT002035EMBL:BT006498EMBL:CP002685
EnsemblPlants:AT2G23930EnsemblPlants:AT2G23930.1entrez:816925ExpressionAtlas:O82221GeneID:816925Genevisible:O82221GO:GO:0000398
GO:GO:0003723GO:GO:0005682GO:GO:0005685GO:GO:0005686GO:GO:0005687GO:GO:0005689GO:GO:0005732
GO:GO:0005829GO:GO:0034719GO:GO:0043186GO:GO:0071004GO:GO:0071011GO:GO:0071013GO:GO:0097526
hmmpanther:PTHR10553hmmpanther:PTHR10553:SF9HOGENOM:HOG000223546InParanoid:O82221InterPro:IPR001163InterPro:IPR010920InterPro:IPR017132
OMA:NTGMVVIPaxDb:O82221Pfam:O82221Pfam:PF01423PhylomeDB:O82221PIR:E84630PIRSF:PIRSF037188
PRIDE:O82221PRO:PR:O82221ProteinModelPortal:O82221Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_179971.1
SMART:SM00651SMR:O82221STRING:3702.AT2G23930.1SUPFAM:SSF50182TAIR:AT2G23930tair10-symbols:SNRNP-GUniGene:At.27766
UniProt:O82221
Coordinates (TAIR10) chr2:+:10182353..10183026
Molecular Weight (calculated) 8839.76 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.34
Length 80 amino acids
Sequence (TAIR10)
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)