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AT2G23840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.812
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HNH endonuclease
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 4176 Blast hits to 4176 proteins in 656 species: Archae - 6; Bacteria - 1679; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 29; Other Eukaryotes - 2425 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1403eggNOG:ENOG410IFW1EMBL:BT010946EMBL:BT011660EMBL:CP002685EnsemblPlants:AT2G23840EnsemblPlants:AT2G23840.1
entrez:816916GeneID:816916GO:GO:0003676GO:GO:0004519Gramene:AT2G23840.1hmmpanther:PTHR33877hmmpanther:PTHR33877:SF2
HOGENOM:HOG000143356InterPro:IPR003615InterPro:IPR029471KEGG:ath:AT2G23840OMA:FRTLKRNPfam:PF01844Pfam:PF14279
PhylomeDB:Q6NMJ9Proteomes:UP000006548RefSeq:NP_179964.2SMART:SM00507SMR:Q6NMJ9STRING:3702.AT2G23840.1TAIR:AT2G23840
UniGene:At.21838UniProt:Q6NMJ9
Coordinates (TAIR10) chr2:-:10153982..10155600
Molecular Weight (calculated) 32725.10 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.53
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHFSARLKL LSSNDGLSFG VDSRDQFRQS LYMAGGGSPL VPIRMSRLKF CARIFSSYSF PYKRKKIRDL DNTEKNLDID EDNDEWDFDG DDDGLETDDH
101: LSCFRGLVLD ISYRPVNVVC WKRAICLEYM DKADVLEYYD QTVSSPTGSF YIPAVLRVPH LLQVVKRRRV KNSLSRKNIL LRDDYTCQYC SSRENLTIDH
201: VMPVSRGGEW TWQNLVAACS RCNSRKGQKT ADEAHMKLLK VPKEPKDYDI VAIPLTNAAI RMLRSNKGMP EEWRQYLAKP LSET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)