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AT2G23810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin8
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin8 (TET8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, conserved site (InterPro:IPR018503), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin9 (TAIR:AT4G30430.1); Has 603 Blast hits to 600 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEIAeggNOG:ENOG410XRN9EMBL:AC004482EMBL:AC005170EMBL:AF325069EMBL:AK175156EMBL:BT010635
EMBL:CP002685EnsemblPlants:AT2G23810EnsemblPlants:AT2G23810.1entrez:816913GeneID:816913Genevisible:Q8S8Q6GO:GO:0005794
GO:GO:0005886GO:GO:0009506GO:GO:0016020GO:GO:0016021GO:GO:0050829Gramene:AT2G23810.1hmmpanther:PTHR32191
hmmpanther:PTHR32191:SF2HOGENOM:HOG000238911InParanoid:Q8S8Q6InterPro:IPR000301InterPro:IPR018499InterPro:IPR018503KEGG:ath:AT2G23810
OMA:KGSTECEPaxDb:Q8S8Q6Pfam:PF00335Pfam:Q8S8Q6PhylomeDB:Q8S8Q6PIR:T02338PRIDE:Q8S8Q6
PRINTS:PR00259PRO:PR:Q8S8Q6PROSITE:PS00421Proteomes:UP000006548RefSeq:NP_850045.2scanprosite:PS00421STRING:3702.AT2G23810.1
SwissPalm:Q8S8Q6TAIR:AT2G23810tair10-symbols:TET8TMHMM:TMhelixUniGene:At.20664UniProt:Q8S8Q6
Coordinates (TAIR10) chr2:-:10135859..10137352
Molecular Weight (calculated) 30659.60 Da
IEP (calculated) 8.61
GRAVY (calculated) 0.23
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MARCSNNLVG ILNFLVFLLS IPILAGGIWL SQKGSTECER FLDKPVIALG VFLMVVAIAG LIGSCCRVTW LLWVYLFVMF LLILLVFCIT VFAFVVTNKG
101: AGEAIEGKGY KEYKLGDYST WLQKRVENGK NWNKIRSCLV ESKVCSKLEA KFVNVPVNSF YKEHLTALQS GCCKPSDECG FEYVNPTTWT KNTTGTHTNP
201: DCQTWDNAKE KLCFDCQSCK AGLLDNVKSA WKKVAIVNIV FLVFLIIVYS VGCCAFRNNK RDDSYSRTYG YKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)