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AT2G23800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Predictors External Curations
AdaBoost: cytosolBaCelLo: endoplasmic reticulumBaCelLo: extracellular
BaCelLo: golgiChloroP: plastidEpiLoc: plastid
iPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgi
MultiLoc: endoplasmic reticulumPlant-mPloc: plastidPredotar: endoplasmic reticulum
Predotar: extracellularPredotar: golgiPredSL: endoplasmic reticulum
PredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulum
PProwler: extracellularPProwler: golgiSLPFA: mitochondrion
SLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgi
SubLoc: cytosolTargetP: endoplasmic reticulumTargetP: extracellular
TargetP: golgiWoLF PSORT: plastidYLoc: endoplasmic reticulum
 AmiGO : endoplasmic reticulum 10759500
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 10759500
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23729351 (2013): cytosol
  • PMID:23729351 (2013): endoplasmic reticulum
  • PMID:21515817 (2011): endoplasmic reticulum
  • PMID:10759500 (2000): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : geranylgeranyl pyrophosphate synthase 2
Curator
Summary (TAIR10)		 encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase
Computational
Description (TAIR10)		 geranylgeranyl pyrophosphate synthase 2 (GGPS2); CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase-related (InterPro:IPR017446), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 4 (TAIR:AT2G18640.1); Has 16682 Blast hits to 16674 proteins in 2948 species: Archae - 341; Bacteria - 9381; Metazoa - 343; Fungi - 516; Plants - 473; Viruses - 12; Other Eukaryotes - 5616 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0142eggNOG:KOG0776EMBL:FJ172354EnsemblPlants:AT2G23800
EnsemblPlants:AT2G23800.1entrez:816912ExpressionAtlas:B6DVJ8Gene3D:1.10.600.10
GeneID:816912GO:GO:0008299GO:GO:0016021GO:GO:0016740
GO:GO:0045337Gramene:AT2G23800.1gramene_pathway:2.5.1.29gramene_pathway:PWY-5120
gramene_pathway:PWY-5805-ARAhmmpanther:PTHR12001hmmpanther:PTHR12001:SF52InterPro:IPR000092
InterPro:IPR008949InterPro:IPR017446KEGG:ath:AT2G23800KO:K13789
OMA:DGAKNSFPANTHER:PTHR12001PaxDb:B6DVJ8Pfam:O04046
Pfam:PF00348PhylomeDB:B6DVJ8PRIDE:B6DVJ8PRIDE:O04046
PROSITE:PS00444PROSITE:PS00723ProteinModelPortal:B6DVJ8RefSeq:NP_179960.1
scanprosite:PS00444scanprosite:PS00723SMR:B6DVJ8STRING:3702.AT2G23800.1
SUPFAM:SSF48576TAIR:AT2G23800tair10-symbols:GGPS2tair10-symbols:GGPS5
TMHMM:TMhelixUniGene:At.1550UniProt:B6DVJ8UniProt:O04046
Coordinates (TAIR10) chr2:-:10131619..10132749
Molecular Weight (calculated) 41341.10 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.02
Length 376 amino acids
Sequence (TAIR10)
(BLAST) 		001: MEPQILFLYL SLFILSLNFF FTNLKPRLVR LFQPSLESRV KTALLSRKEV AAFLDSPIVE DEEGEEREEE EEGGIVSNAN FTFEFDPYMM SKAESVNKAL
101: EEAIPVGEPL KIHEAMRYAI LAAGKRVRPI LCLASCELVG GQENAAMPAA CAVEMIHTMS LIKDDLPCMD NDDLRRGKPT THKVYGEGVA ILSGGALLSL
201: AFEHMTTAEI SSERMVWAVR ELARSIGTRG LVAGQAMDIS SEGLDLNEVG LEHLEFIHVH KTAVLLETAA VLGAIIGGGS DEEIESVRKF ARCIGLLFQV
301: VDDILDETKS SEELGKTAGK DQLAGKLTYP KLIGLEKSKE FVKRLTKDAR QHLQGFSSEK VAPLVALTTF IANRNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)