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AT2G23640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.617
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Reticulan like protein B13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulan like protein B13 (RTNLB13); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G10915.3); Has 751 Blast hits to 751 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 0; Plants - 418; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:2248eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AC003040
EMBL:AC004482EMBL:BX822075EMBL:CP002685EnsemblPlants:AT2G23640
EnsemblPlants:AT2G23640.1entrez:816896GeneID:816896Genevisible:O64837
GO:GO:0005789GO:GO:0071458GO:GO:0071782GO:GO:0071786
Gramene:AT2G23640.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF86HOGENOM:HOG000154223
InParanoid:O64837InterPro:IPR003388KEGG:ath:AT2G23640OMA:WMFRVGA
PaxDb:O64837Pfam:O64837Pfam:PF02453Pfscan:PS50845
PhylomeDB:O64837PIR:T01153PRIDE:O64837PRO:PR:O64837
PROSITE:PS50845ProteinModelPortal:O64837Proteomes:UP000006548RefSeq:NP_565555.1
STRING:3702.AT2G23640.1TAIR:AT2G23640tair10-symbols:RTNLB13TMHMM:TMhelix
UniGene:At.50091UniProt:O64837
Coordinates (TAIR10) chr2:+:10057554..10059042
Molecular Weight (calculated) 23772.20 Da
IEP (calculated) 7.63
GRAVY (calculated) 0.09
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)