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AT2G23470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF647
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROOT UV-B SENSITIVE 4 (RUS4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT5G49820.1); Has 409 Blast hits to 406 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 58; Plants - 179; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XU74eggNOG:KOG4249EMBL:AC003040EMBL:AK176380EMBL:CP002685EnsemblPlants:AT2G23470EnsemblPlants:AT2G23470.1
entrez:816879GeneID:816879Genevisible:Q67YT8GO:GO:0016021Gramene:AT2G23470.1hmmpanther:PTHR12770hmmpanther:PTHR12770:SF23
HOGENOM:HOG000140919InParanoid:Q67YT8InterPro:IPR006968KEGG:ath:AT2G23470OMA:FRAIGIGPANTHER:PTHR12770PaxDb:Q67YT8
Pfam:PF04884Pfam:Q67YT8PhylomeDB:Q67YT8PIR:T01136PRIDE:Q67YT8PRO:PR:Q67YT8Proteomes:UP000006548
RefSeq:NP_179928.2STRING:3702.AT2G23470.1TAIR:AT2G23470tair10-symbols:RUS4UniGene:At.48510UniGene:At.66350UniProt:Q67YT8
Coordinates (TAIR10) chr2:-:9999105..10001398
Molecular Weight (calculated) 58623.20 Da
IEP (calculated) 9.56
GRAVY (calculated) 0.02
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSTNQSSRL FQYPCKSTST QYPIFIFPKF SSRKFVKSLR TSIDYKQEGA SKEDLVVPSN VARRLPIIIK KSGKVSRYFI KGDSLELLCV DEEEDDSTSF
101: CLGLDDGFWK LIRLTSSAAK DFFLPKQVSD NYISYVKWKF LHRVFSSALQ VLATQAMFRA IGIGQSRSLA SSAAFNWILK DGLGRLSRCI YTASLASAFD
201: TNLKRVRFST SVLFSLSIGV ELMTPVFPQY FLLLASIANI AKQISLSCYL ATGSAVHRSF AVADNLGEVS AKAQIQTVCF DNLGLLLAVL LNMLFQHNQR
301: LQACLPFVLY PIFSTFDLLG IYQGLKHINL QTLTKDRLEI ILERWIEFRQ VPSPAEVSEE EGIGLLGSRG SKRVWPIRIG CLDPKAQIPT LSMMAMQSLC
401: SDDGYFITME LSSQGFRRIP KSGIVICLRE GANSVDVITS LLQTCYIRKS LGANRTKRSY LSFSDLTLQD WTLLTRESKR AARDDNIALN KQMQEQGWIV
501: KNVLLSAEEQ IRYIFDKNQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)