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AT2G23360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF869)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G19835.2); Has 38218 Blast hits to 24021 proteins in 1620 species: Archae - 547; Bacteria - 4231; Metazoa - 19834; Fungi - 3463; Plants - 2306; Viruses - 121; Other Eukaryotes - 7716 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK6KeggNOG:ENOG410YBNSEMBL:AC003040EMBL:CP002685
EnsemblPlants:AT2G23360EnsemblPlants:AT2G23360.1entrez:816868GeneID:816868
Genevisible:Q9SLN1Gramene:AT2G23360.1hmmpanther:PTHR31580hmmpanther:PTHR31580:SF3
HOGENOM:HOG000090333InParanoid:Q9SLN1InterPro:IPR008587iPTMnet:Q9SLN1
KEGG:ath:AT2G23360ncoils:CoilOMA:PPHERKFPaxDb:Q9SLN1
Pfam:PF05911Pfam:Q9SLN1PIR:T01125PRIDE:Q9SLN1
PRO:PR:Q9SLN1ProteinModelPortal:Q9SLN1Proteomes:UP000006548RefSeq:NP_179917.2
STRING:3702.AT2G23360.1TAIR:AT2G23360UniGene:At.43345UniProt:Q9SLN1
Coordinates (TAIR10) chr2:+:9949420..9952727
Molecular Weight (calculated) 101428.00 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.83
Length 898 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHKAWPWKK KSMEKTVVES NGEVVADKIE LEHRVKSLND KLNSVEAESN KHETEAQEAI VGWEKTKAEV ASLKKKLDEA LNEKHRSEER SSHTDAGLKE
101: CVQQLRFVRE EQERRMHDAL TKASQEYERR LIVIKTELAG SGKRLAEAEG ENAQLSKALL AKNKTVEDLN RERDRIEVDF NSLVSSLESK EKENVSLRYE
201: VRVLEKELEL RNEEREFSRR TAEASHKLHL ENVKKVAKLE SECQRLRVLV RKRLPGPAAL SKMSNEVEML GRRRVNGSPH SPMIDSEKIN NLTEQLCLLE
301: EENKTLREAL NKKVSELQFS RNMYSRTASR LLEFESHLEE SSRGTNIEPS RSSNVSHEVS LASVTEFDND DKVSCADSWA SALLSELDNF KNKKEMGTSL
401: VGTPKAAEMK LMDDFAEMEK LAMVASTIDN RPGSSPICSS DSISATGPVE NESNENSSEA TKTSGTVYSL NPDASPKDDI KSDSLPQSLH IVLKAVMEHK
501: HITQRNTDEV LEDIRKALSS VNHSSFSTNH QETKTLTVED RLDMECNISK SIHRIIDVIE GVSLKDERHV SNRESERLSG YTARVLQWKT TELSSVLQRF
601: LQACYDLLDR KADMKKFAQE LSSVLEWMVN HCFSLQDVST MRDEIKKQFE WDESRSGSEV DIGIFRQVSE AEKLRTEDVS FLACKDQLIE DKPGNQNLSR
701: KTVEEEANDK TASASENELK LEEKQNMRTE LEIAAASEKL AECQETILNL GKQLKALTNS KETALLSETL MYDVTDKSNN LPDAQPSHET TKPEKRLTSQ
801: RSSLLDQMKA EDHNTGESKD QKPQAADKNG KGGNSSVYNE TIEALEQILL SDKSKGSDSN CFAIVPQKKT GGVKSLWRKL LGRNKKGKSK KVPNPFAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)