suba logo
AT2G23350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : poly(A) binding protein 4
Curator
Summary (TAIR10)
polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed.
Computational
Description (TAIR10)
poly(A) binding protein 4 (PAB4); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 520413 Blast hits to 486687 proteins in 21592 species: Archae - 10501; Bacteria - 294432; Metazoa - 110769; Fungi - 17969; Plants - 36260; Viruses - 34479; Other Eukaryotes - 16003 (source: NCBI BLink).
Protein Annotations
BioGrid:2219eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AC002391
EMBL:AF360217EMBL:AY050859EMBL:AY079389EMBL:CP002685
EnsemblPlants:AT2G23350EnsemblPlants:AT2G23350.1entrez:816867Gene3D:1.10.1900.10
Gene3D:3.30.70.330GeneID:816867Genevisible:O22173GO:GO:0000166
GO:GO:0003723GO:GO:0005634GO:GO:0005829GO:GO:0006417
GO:GO:0016032GO:GO:0046686Gramene:AT2G23350.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF349HOGENOM:HOG000217922InParanoid:O22173IntAct:O22173
InterPro:IPR000504InterPro:IPR002004InterPro:IPR003954InterPro:IPR006515
InterPro:IPR012677iPTMnet:O22173KEGG:ath:AT2G23350KO:K13126
OMA:MRPAFIPPaxDb:O22173Pfam:O22173Pfam:PF00076
Pfam:PF00658Pfscan:PS50102Pfscan:PS51309PhylomeDB:O22173
PIR:T00497PRIDE:O22173PRO:PR:O22173ProMEX:O22173
PROSITE:PS50102PROSITE:PS51309ProteinModelPortal:O22173Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_179916.1
SMART:SM00360SMART:SM00361SMART:SM00517SMR:O22173
STRING:3702.AT2G23350.1SUPFAM:SSF54928SUPFAM:SSF63570TAIR:AT2G23350
tair10-symbols:PAB4tair10-symbols:PABP4TIGRfam:TIGR01628TIGRFAMs:TIGR01628
UniGene:At.25439UniProt:O22173
Coordinates (TAIR10) chr2:+:9943209..9946041
Molecular Weight (calculated) 71656.70 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.51
Length 662 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)