suba logo
AT2G23320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 15
Curator
Summary (TAIR10)
Encodes WRKY DNA-binding protein 15 (WRKY15).
Computational
Description (TAIR10)
WRKY DNA-binding protein 15 (WRKY15); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3350 Blast hits to 2896 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 3315; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:2216eggNOG:ENOG410IVR7eggNOG:ENOG410YD1EEMBL:AC002391EMBL:AF224704EMBL:AF370194EMBL:AY062950
EMBL:CP002685EnsemblPlants:AT2G23320EnsemblPlants:AT2G23320.1entrez:816864ExpressionAtlas:O22176Gene3D:2.20.25.80GeneID:816864
Genevisible:O22176GO:GO:0003700GO:GO:0005516GO:GO:0005634GO:GO:0006351GO:GO:0010200GO:GO:0043565
GO:GO:0044212hmmpanther:PTHR31282hmmpanther:PTHR31282:SF33HOGENOM:HOG000029200InParanoid:O22176InterPro:IPR003657InterPro:IPR018872
iPTMnet:O22176KEGG:ath:AT2G23320MINT:MINT-1338998OMA:MAVELMTPaxDb:O22176Pfam:O22176Pfam:PF03106
Pfam:PF10533Pfscan:PS50811PhylomeDB:O22176PIR:T00500PRIDE:O22176PRO:PR:O22176PROSITE:PS50811
ProteinModelPortal:O22176Proteomes:UP000006548RefSeq:NP_179913.1SMART:SM00774SMR:O22176STRING:3702.AT2G23320.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT2G23320tair10-symbols:WRKY15UniGene:At.24883UniProt:O22176
Coordinates (TAIR10) chr2:+:9924998..9926154
Molecular Weight (calculated) 34265.40 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.51
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)