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AT2G23160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G16450.1); Has 1569 Blast hits to 1528 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC002391EMBL:CP002685EMBL:DQ459183EnsemblPlants:AT2G23160
EnsemblPlants:AT2G23160.1entrez:816848GeneID:816848Genevisible:Q1KS79
Gramene:AT2G23160.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703
InParanoid:Q1KS79InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451
KEGG:ath:AT2G23160PaxDb:Q1KS79Pfam:PF00646Pfam:PF08268
Pfam:Q1KS79PhylomeDB:Q1KS79PIR:T00516PRIDE:Q1KS79
PRO:PR:Q1KS79ProteinModelPortal:Q1KS79Proteomes:UP000006548RefSeq:NP_179897.2
SMART:SM00256SUPFAM:SSF81383TAIR:AT2G23160TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.52873UniProt:Q1KS79
Coordinates (TAIR10) chr2:+:9862470..9863393
Molecular Weight (calculated) 35917.90 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.25
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSSPISID LIAEILSRVP SKSVARFRCV SKPWASMIRR PYFTELFLTR SSPKPCILFA TVADGVWSFF SLPQYPYEKS SSASVAASAK FHVKFPPNNM
101: RIGHNSDRRY FSYGYTSGLI YLYGDSSDDR SVICNPYTGE YAILPYLQRY RKTYSFLVFE PIEKQFKILF MAYLSGDRDH KILTVGTGNM KWRTIRCSLR
201: YEIVSEGVSI NGVLYYLGET SAWDNKDYDL KYDYAIVCFD IRSEKFIFFE IERFCRLINY KGKLAVIYFE DDVNYQSCLY RKKNYVEPDA INKLNVWVLE
301: DVEKQEW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)