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AT2G23130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21165646 (2011): plasma membrane
  • PMID:15840645 (2005): extracellular region
  • PMID:15840645 (2005): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 17
Curator
Summary (TAIR10)
AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.
Computational
Description (TAIR10)
arabinogalactan protein 17 (AGP17); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 18 (TAIR:AT4G37450.1); Has 67144 Blast hits to 32658 proteins in 1837 species: Archae - 189; Bacteria - 18272; Metazoa - 17078; Fungi - 7544; Plants - 7608; Viruses - 2133; Other Eukaryotes - 14320 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWF9eggNOG:ENOG41104ZIEMBL:AC002391EMBL:AC004401EMBL:AF305939EMBL:AY086875EMBL:BT002926
EMBL:BT008601EMBL:CP002685EnsemblPlants:AT2G23130EnsemblPlants:AT2G23130.1entrez:816845ExpressionAtlas:O22194GeneID:816845
Genevisible:O22194GO:GO:0005886GO:GO:0031225hmmpanther:PTHR37209HOGENOM:HOG000029143KEGG:ath:AT2G23130OMA:GPSDAFS
PaxDb:O22194Pfam:O22194PIR:T00519PRIDE:O22194PRO:PR:O22194Proteomes:UP000006548RefSeq:NP_179894.1
STRING:3702.AT2G23130.1TAIR:AT2G23130tair10-symbols:AGP17tair10-symbols:ATAGP17TMHMM:TMhelixUniGene:At.12325UniProt:O22194
Coordinates (TAIR10) chr2:+:9844411..9845186
Molecular Weight (calculated) 18482.00 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.13
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRNILLTVT LICIVFITVG GQSPATAPIH SPSTSPHKPK PTSPAISPAA PTPESTEAPA KTPVEAPVEA PPSPTPASTP QISPPAPSPE ADTPSAPEIA
101: PSADVPAPAL TKHKKKTKKH KTAPAPGPAS ELLSPPAPPG EAPGPGPSDA FSPAADDQSG AQRISVVIQM VGAAAIAWSL LVLAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)