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AT2G23120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.896
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein, group 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein, group 6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 6 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 6 (TAIR:AT2G23110.2); Has 37 Blast hits to 37 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTR3eggNOG:ENOG41107M7EMBL:AC004401EMBL:AY088718EMBL:AY142639EMBL:CP002685EnsemblPlants:AT2G23120
EnsemblPlants:AT2G23120.1entrez:816844GeneID:816844GO:GO:0005829GO:GO:0005886Gramene:AT2G23120.1hmmpanther:PTHR33922
hmmpanther:PTHR33922:SF4InterPro:IPR018930KEGG:ath:AT2G23120OMA:PYMATGTPfam:PF10714PhylomeDB:Q8S8R1PIR:G84620
Proteomes:UP000006548RefSeq:NP_565548.1STRING:3702.AT2G23120.1TAIR:AT2G23120UniGene:At.22335UniProt:Q8S8R1
Coordinates (TAIR10) chr2:+:9842102..9842353
Molecular Weight (calculated) 8482.59 Da
IEP (calculated) 4.23
GRAVY (calculated) -1.00
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MEAGKTPPTT TTTTEKKTEQ VKDNDLPTDS PYMATGTLED YKLKAYGAEG HQEPTPGLGG GSTDAPTPSG DAPAATTTDA KAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)