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AT2G22980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.1); Has 4004 Blast hits to 3927 proteins in 473 species: Archae - 0; Bacteria - 512; Metazoa - 640; Fungi - 845; Plants - 1555; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22980-MONOMERBioCyc:ARA:GQT-553-MONOMERBioCyc:ARA:GQT-554-MONOMERBioCyc:ARA:GQT-555-MONOMERBioCyc:MetaCyc:AT2G22980-MONOMEREC:2.3.1.103eggNOG:COG2939
eggNOG:KOG1282EMBL:AC004401EMBL:AC004786EMBL:AF083796EMBL:AF410326EMBL:BT000529EMBL:CP002685
EnsemblPlants:AT2G22980EnsemblPlants:AT2G22980.1entrez:816829ESTHER:arath-SCP13ExpressionAtlas:Q8H780Gene3D:3.40.50.1820GeneID:816829
Genevisible:Q8H780GO:GO:0004185GO:GO:0005576GO:GO:0047158hmmpanther:PTHR11802hmmpanther:PTHR11802:SF29HOGENOM:HOG000198297
InParanoid:Q8H780InterPro:IPR001563InterPro:IPR029058KEGG:ath:AT2G22980KO:K16296MEROPS:S10.004PANTHER:PTHR11802
PaxDb:Q8H780Pfam:PF00450Pfam:Q8H780PhylomeDB:Q8H780PIR:B84619PRIDE:Q8H780PRINTS:PR00724
PRO:PR:Q8H780ProteinModelPortal:Q8H780Proteomes:UP000006548RefSeq:NP_001031402.1RefSeq:NP_179881.3SMR:Q8H780STRING:3702.AT2G22980.4
SUPFAM:SSF53474TAIR:AT2G22980tair10-symbols:SCPL13UniGene:At.19690UniProt:Q8H780
Coordinates (TAIR10) chr2:+:9779029..9783078
Molecular Weight (calculated) 49153.00 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.23
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLTLEFLLL LIVLILSHHA HSGSIVKFLP GFEGPLPFEL ETGYIGIGEE EEVQLFYYFI KSEKNPEEDP LLLWLSGGPG CSSLTGLLFE NGPVALKFEV
101: YNGSVPSLVS TTYSWTKMAN IIFLDQPVGS GFSYSRTPLV DKISDTGEVK RIYEFLQKWL SKHQQFFSNP FYVGGDSYSG MIVPPLVQEI GKGNYQINLQ
201: GYILGNPITD TESEQNYQIP YAHGMALISD ELYKSMERIC KGNYVKVDSL NTKCYKLIKD YQKCIHKLNK YHILLPDCDI TSPDCFLYRY TLITFWANNK
301: SVREALQVNK GSIGKWVQCN YKNISYNYDI KSSVAYHMKN SIDGYRSLIY NGDHDMMVPF LATQAWIRSL NYSITDDWKP WMINDQIAGY TRSYSNKMTF
401: ATIKGSGHTA EYKPKETSIM FKRWISAQPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)