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AT2G22940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1HeggNOG:KOG1812EMBL:AC004786EMBL:CP002685EnsemblPlants:AT2G22940EnsemblPlants:AT2G22940.1entrez:816825
GeneID:816825Gramene:AT2G22940.1KEGG:ath:AT2G22940PIR:G84618Proteomes:UP000006548RefSeq:NP_179878.1STRING:3702.AT2G22940.1
TAIR:AT2G22940UniGene:At.66233UniProt:O81011
Coordinates (TAIR10) chr2:-:9761655..9763462
Molecular Weight (calculated) 11228.40 Da
IEP (calculated) 11.45
GRAVY (calculated) -0.80
Length 101 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTARANREN GAGNIYIGFG DSQLSLMDSH QARPEPVHTV CSKPPLKRPP SREEHLRQRL VKTIHSQRII SGKNRLSNPP RMANPQANSI IGISTYFGPT
101: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)