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AT2G22840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : growth-regulating factor 1
Curator
Summary (TAIR10)
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower
Computational
Description (TAIR10)
growth-regulating factor 1 (GRF1); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 714 Blast hits to 669 proteins in 68 species: Archae - 0; Bacteria - 24; Metazoa - 65; Fungi - 20; Plants - 548; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:2168eggNOG:ENOG410IG0WeggNOG:ENOG4111S3MEMBL:AB493560EMBL:AC004786EMBL:AY102634EMBL:CP002685
EnsemblPlants:AT2G22840EnsemblPlants:AT2G22840.1entrez:816815GeneID:816815Genevisible:O81001GO:GO:0005524GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009624GO:GO:0048364GO:GO:0061062Gramene:AT2G22840.1hmmpanther:PTHR31602
hmmpanther:PTHR31602:SF2HOGENOM:HOG000243855InParanoid:O81001IntAct:O81001InterPro:IPR014977InterPro:IPR014978InterPro:IPR031137
iPTMnet:O81001KEGG:ath:AT2G22840OMA:LGGMMNTPANTHER:PTHR31602PaxDb:O81001Pfam:O81001Pfam:PF08879
Pfam:PF08880Pfscan:PS51666Pfscan:PS51667PhylomeDB:O81001PIR:E84617PRIDE:O81001PRO:PR:O81001
PROSITE:PS51666PROSITE:PS51667ProteinModelPortal:O81001Proteomes:UP000006548RefSeq:NP_179869.1SMART:SM00951STRING:3702.AT2G22840.1
TAIR:AT2G22840tair10-symbols:AtGRF1tair10-symbols:GRF1UniGene:At.28144UniProt:O81001
Coordinates (TAIR10) chr2:+:9728841..9731141
Molecular Weight (calculated) 56404.40 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.62
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)