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AT2G22840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : growth-regulating factor 1
Curator
Summary (TAIR10)
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower
Computational
Description (TAIR10)
growth-regulating factor 1 (GRF1); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 714 Blast hits to 669 proteins in 68 species: Archae - 0; Bacteria - 24; Metazoa - 65; Fungi - 20; Plants - 548; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:2168eggNOG:ENOG410IG0WeggNOG:ENOG4111S3MEMBL:AB493560
EMBL:AC004786EMBL:AY102634EMBL:CP002685EnsemblPlants:AT2G22840
EnsemblPlants:AT2G22840.1entrez:816815GeneID:816815Genevisible:O81001
GO:GO:0005524GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009624GO:GO:0048364GO:GO:0061062Gramene:AT2G22840.1
hmmpanther:PTHR31602hmmpanther:PTHR31602:SF2HOGENOM:HOG000243855InParanoid:O81001
IntAct:O81001InterPro:IPR014977InterPro:IPR014978InterPro:IPR031137
iPTMnet:O81001KEGG:ath:AT2G22840OMA:LGGMMNTPANTHER:PTHR31602
PaxDb:O81001Pfam:O81001Pfam:PF08879Pfam:PF08880
Pfscan:PS51666Pfscan:PS51667PhylomeDB:O81001PIR:E84617
PRIDE:O81001PRO:PR:O81001PROSITE:PS51666PROSITE:PS51667
ProteinModelPortal:O81001Proteomes:UP000006548RefSeq:NP_179869.1SMART:SM00951
STRING:3702.AT2G22840.1TAIR:AT2G22840tair10-symbols:AtGRF1tair10-symbols:GRF1
UniGene:At.28144UniProt:O81001
Coordinates (TAIR10) chr2:+:9728841..9731141
Molecular Weight (calculated) 56404.40 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.62
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)