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AT2G22830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squalene epoxidase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 3 (TAIR:AT4G37760.1); Has 2838 Blast hits to 2834 proteins in 830 species: Archae - 46; Bacteria - 1617; Metazoa - 134; Fungi - 223; Plants - 197; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).
Protein Annotations
BRENDA:1.14.13.132EC:1.14.14.17eggNOG:COG0654eggNOG:KOG1298EMBL:AC004786EMBL:CP002685EnsemblPlants:AT2G22830
EnsemblPlants:AT2G22830.1entrez:816814Gene3D:3.50.50.60GeneID:816814Genevisible:O81000GO:GO:0004506GO:GO:0016021
GO:GO:0031966GO:GO:0050660Gramene:AT2G22830.1gramene_pathway:1.14.99.7gramene_pathway:PWY-5670hmmpanther:PTHR10835hmmpanther:PTHR10835:SF1
HOGENOM:HOG000174713InParanoid:O81000InterPro:IPR013698InterPro:IPR023753KEGG:ath:AT2G22830KO:K00511OMA:TEMREAC
PaxDb:O81000Pfam:O81000Pfam:PF08491Pfam:PF13450PhylomeDB:O81000PIR:D84617PRIDE:O81000
PRO:PR:O81000ProteinModelPortal:O81000Proteomes:UP000006548Reactome:R-ATH-191273Reactome:R-ATH-2426168RefSeq:NP_179868.1SMR:O81000
STRING:3702.AT2G22830.1SUPFAM:SSF51905TAIR:AT2G22830tair10-symbols:SQE2UniGene:At.39381UniPathway:UPA00767UniProt:O81000
Coordinates (TAIR10) chr2:-:9723947..9726270
Molecular Weight (calculated) 64796.30 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.00
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPFVIRNLP RFQSTLRSSL LYTNHRPSSR FSLSTRRFTT GATYIRRWKA TAAQTLKLSA VNSTVMMKPA KIALDQFIAS LFTFLLLYIL RRSSNKNKKN
101: RGLVVSQNDT VSKNLETEVD SGTDVIIVGA GVAGSALAHT LGKEGRRVHV IERDFSEQDR IVGELLQPGG YLKLIELGLE DCVKKIDAQR VLGYVLFKDG
201: KHTKLAYPLE TFDSDVAGRS FHNGRFVQRM REKALTLSNV RLEQGTVTSL LEEHGTIKGV RYRTKEGNEF RSFAPLTIVC DGCFSNLRRS LCKPKVDVPS
301: TFVGLVLENC ELPFANHGHV VLGDPSPILM YPISSSEVRC LVDVPGQKLP PIANGEMAKY LKTRVAPQVP TKVREAFITA VEKGNIRTMP NRSMPADPIP
401: TPGALLLGDA FNMRHPLTGG GMTVALADIV VLRDLLRPIR NLNDKEALSK YIESFYTLRK PVASTINTLA DALYKVFLAS SDEARTEMRE ACFDYLSLGG
501: VFSSGPVALL SGLNPRPLSL VLHFFAVAIY AVCRLMLPFP SIESFWLGAR IISSASSIIF PIIKAEGVRQ MFFPRTIPAI YRAPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)