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AT2G22780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : peroxisomal NAD-malate dehydrogenase 1
Curator
Summary (TAIR10)
encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational
Description (TAIR10)
peroxisomal NAD-malate dehydrogenase 1 (PMDH1); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 2 (TAIR:AT5G09660.1); Has 16991 Blast hits to 16989 proteins in 5457 species: Archae - 237; Bacteria - 11827; Metazoa - 1259; Fungi - 489; Plants - 758; Viruses - 0; Other Eukaryotes - 2421 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22780-MONOMERBioCyc:MetaCyc:AT2G22780-MONOMERBioGrid:2161EC:1.1.1.37eggNOG:COG0039eggNOG:KOG1494EMBL:AC005617
EMBL:AF428346EMBL:BT003009EMBL:CP002685EnsemblPlants:AT2G22780EnsemblPlants:AT2G22780.1entrez:816808ExpressionAtlas:O82399
Gene3D:3.40.50.720Gene3D:3.90.110.10GeneID:816808Genevisible:O82399GO:GO:0005777GO:GO:0006097GO:GO:0006099
GO:GO:0006108GO:GO:0009507GO:GO:0009514GO:GO:0030060GO:GO:0031998GO:GO:0080093Gramene:AT2G22780.1
gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-561gramene_pathway:PWY-5690gramene_pathway:PWYQT-4481hmmpanther:PTHR11540hmmpanther:PTHR11540:SF27
HOGENOM:HOG000213792InParanoid:O82399IntAct:O82399IntAct:Q0WUS4InterPro:IPR001236InterPro:IPR001252InterPro:IPR001557
InterPro:IPR010097InterPro:IPR015955InterPro:IPR016040InterPro:IPR022383KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37
KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37KEGG:ath:AT2G22780KO:K00026OMA:AHAGYRF
PANTHER:PTHR11540PaxDb:O82399Pfam:O82399Pfam:PF00056Pfam:PF02866PhylomeDB:O82399PIR:G84616
PIRSF:PIRSF000102PRIDE:O82399PRO:PR:O82399PROSITE:PS00068ProteinModelPortal:O82399Proteomes:UP000006548Reactome:R-ATH-70263
Reactome:R-ATH-71403RefSeq:NP_179863.1scanprosite:PS00068SMR:O82399STRING:3702.AT2G22780.1SUPFAM:SSF51735SUPFAM:SSF56327
TAIR:AT2G22780tair10-symbols:PMDH1TIGRfam:TIGR01772TIGRFAMs:TIGR01772UniGene:At.13158UniProt:O82399UniProt:Q0WUS4
Coordinates (TAIR10) chr2:-:9689995..9691923
Molecular Weight (calculated) 37467.80 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.14
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)