AT2G22720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPT2 chromatin protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPT2 chromatin protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 20732 Blast hits to 11501 proteins in 824 species: Archae - 15; Bacteria - 2039; Metazoa - 8268; Fungi - 3444; Plants - 709; Viruses - 228; Other Eukaryotes - 6029 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9659235..9660532 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37497.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 12.10 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.40 | ||||||||||||||||||||||||||||
| Length | 340 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHSRPSSSG SKMNHSRPAT SGSQMPNSRP ASSGSQMQSR AVSGSGRPAS SGSQMQNSRP QNSRPASAGS QMQQRPASSG SQRPASSGSQ RPASSGSQRP 101: GSSTNRQAPM RPPGSGSTMN GQSANRNGQL NSRSDSRRSA PAKVPVDHRK QMSSSNGVGP GRSATNARPL PSKSSLERKP SISAGKSSLQ SPQRPSSSRP 201: MSSDPRQRVV EQRKVSRDMA TPRMIPKQSA PTSKHQMMSK PALKRPPSRD IDHERRLLKK KKPARSEDQE AFDMLRQLLP PKRFSRYDDD DINMEAGFED 301: IQKEERRSAR IAREEDEREL KLLEEEERRE RLKKNRKLSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)