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AT2G22690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At2g22690
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 761 Blast hits to 757 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 206; Plants - 137; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5109eggNOG:KOG2817EMBL:AC006340EMBL:BT026032
EMBL:CP002685EMBL:DQ059108EnsemblPlants:AT2G22690EnsemblPlants:AT2G22690.1
EnsemblPlants:AT2G22690.2entrez:816800Gene3D:3.30.40.10GeneID:816800
GO:GO:0008270Gramene:AT2G22690.1Gramene:AT2G22690.2hmmpanther:PTHR12170
hmmpanther:PTHR12170:SF3InterPro:IPR001841InterPro:IPR006594InterPro:IPR006595
InterPro:IPR013083InterPro:IPR013144InterPro:IPR024964InterPro:IPR027370
InterPro:IPR027711KEGG:ath:AT2G22690ncoils:CoilOMA:EDNHESV
PANTHER:PTHR12170:SF3Pfam:PF10607Pfam:PF13445Pfscan:PS50089
Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q9ZQ45PIR:F84615
PROSITE:PS50089PROSITE:PS50896PROSITE:PS50897Proteomes:UP000006548
RefSeq:NP_001031397.1RefSeq:NP_565541.1SMART:SM00184SMART:SM00668
SMART:SM00757SMR:Q9ZQ45STRING:3702.AT2G22690.1SUPFAM:SSF57850
TAIR:AT2G22690UniGene:At.26923UniProt:Q9ZQ45
Coordinates (TAIR10) chr2:-:9649820..9650965
Molecular Weight (calculated) 43652.40 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.41
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MELKNVKDAF DRVTKKQKLC YSKTHEVVDK MSQEIDKALK TIQEDNHESV VADLKKTFEE IAPINLLEAS QKEINGVLTK YPKALDKTLN PDISTAYRNV
101: KFDTHTVHQI LAQFFYRQGM YDVGDCFISE TGEVKPESSV TKAFMEMNMI LEAMKERDLG PALKWVASNS DKLKEAKSDL ELKLHSLHFL EIAKDKTSEE
201: AINYARKHFA TYSADSCCFP EIQKLMCSLL WIRNLNKSPY SEFLSPVLWT NAAKELTRQY CILLGESPES PLSVTVAAGS QVLPTFLKYL NVLPEKRKEW
301: QTMEQLLVPV ELSEEYRFYS VFVCPVSKEH SSEDNPPMRL ACGHVLCKQS INRMSRNGSR SFKCPYCPTD IDASQCKQLY F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)