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AT2G22660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.636
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (duplicated DUF1399)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (duplicated DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 421 Blast hits to 378 proteins in 86 species: Archae - 0; Bacteria - 30; Metazoa - 19; Fungi - 243; Plants - 113; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF76eggNOG:ENOG4111FEQEMBL:AC006340EMBL:AY070719EMBL:CP002685EnsemblPlants:AT2G22660EnsemblPlants:AT2G22660.1
EnsemblPlants:AT2G22660.2entrez:816797ExpressionAtlas:Q9ZQ47GeneID:816797Genevisible:Q9ZQ47GO:GO:0005886GO:GO:0009738
GO:GO:0009787GO:GO:0071470hmmpanther:PTHR34365hmmpanther:PTHR34365:SF2HOGENOM:HOG000243905InterPro:IPR009836KEGG:ath:AT2G22660
OMA:CGDMVKSPaxDb:Q9ZQ47Pfam:PF07173PhylomeDB:Q9ZQ47PIR:C84615PRIDE:F4IJL4PRO:PR:Q9ZQ47
ProteinModelPortal:Q9ZQ47Proteomes:UP000006548RefSeq:NP_001031396.1RefSeq:NP_179851.2STRING:3702.AT2G22660.2SwissPalm:Q9ZQ47TAIR:AT2G22660
UniGene:At.21604UniGene:At.70762UniProt:F4IJL4
Coordinates (TAIR10) chr2:+:9627737..9629957
Molecular Weight (calculated) 66487.30 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.33
Length 586 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKEKDHEVE WLEAQKIEIS VDLLAAAKQH LLFLETVDRN RWLYDGPALE KAIYRYNACW LPLLVKYSES SSVSEGSLVP PLDCEWIWHC HRLNPVRYNS
101: DCEQFYGRVL DNSGVLSSVD GNCKLKTEDL WKRLYPDEPY ELDLDNIDLE DISEKSSALE KCTKYDLVSA VKRQSPFYYQ VSRSHVNSDI FLQEAVARYK
201: GFLYLIKMNR ERSLKRFCVP TYDVDLIWHT HQLHPVSYCD DMVKLIGKVL EHDDTDSDRG KGKKLDTGFS KTTAQWEETF GTRYWKAGAM HRGKTPVPVT
301: NSPYASDVLV KDPTAKDDFQ NLIQFPEVEV VEVLLEIIGV RNLPDGHKGK VSVMFSKTQP DSLFNAERRL TILSEVGEKQ VATFQCEPTG ELVFKLISCS
401: PSKIPVSREP KNLGFASLSL KEFLFPVITQ LSVEKWLELT PSKGSQTDTK PISLRVAVSF TPPVRSPSVL HMVQSRPSCK GSCFFPIIGK SRLAKSSTHI
501: VDETQTEVIT LQIRNSADGG ILKDDQRQVM GVTDSGETRV LAVYTGSFWS LLDSKWSLKQ INASTADNPL FEILGPRVVY STILFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)