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AT2G22540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Computational
Description (TAIR10)
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:BT033098EMBL:EU078687EMBL:JX863084EMBL:JX863085EMBL:JX863086
EMBL:JX863087EMBL:JX863088EMBL:JX863089EMBL:JX863091EMBL:JX863092EMBL:JX863093EMBL:JX863095
EMBL:JX863096EMBL:JX863097EMBL:JX863098EMBL:JX863099EnsemblPlants:AT2G22540EnsemblPlants:AT2G22540.1entrez:816787
ExpressionAtlas:A7XFU1GeneID:816787GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT2G22540.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF179InterPro:IPR002100InterPro:IPR002487ncoils:CoilOMA:KSHRLRQPfam:PF00319
Pfam:PF01486Pfam:Q9FVC1Pfscan:PS50066Pfscan:PS51297PhylomeDB:A7XFU1PRINTS:PR00404PROSITE:PS00350
PROSITE:PS50066PROSITE:PS51297RefSeq:NP_179840.2scanprosite:PS00350SMART:SM00432SMR:A7XFU1STRING:3702.AT2G22540.1
SUPFAM:SSF55455TAIR:AT2G22540tair10-symbols:AGL22tair10-symbols:SVPUniGene:At.22081UniProt:A7XFU1UniProt:Q9FVC1
Coordinates (TAIR10) chr2:+:9580417..9583603
Molecular Weight (calculated) 26897.80 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.71
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)