AT2G22475.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRAM domain family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GL2-EXPRESSION MODULATOR (GEM); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT4G40100.1); Has 360 Blast hits to 359 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9541523..9544778 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32216.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 299 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPPKGDTVV KTEVPVKDPS LSVVDSKTKG VEDANTEIAL SDEVEIETKG SDSTPVKAPS RTSSGSKKSV HWSPELVSGS QEPDQKAASS SSAGSNPYIA 101: RSPAETSDAS LKDTMETVKG VLGRWGKRVA EAAKKTESLA GNTWQHLRTA PSFADAAMGR IAQSTKVFAE GGYEKIFRQT FETDPEEQLL NSFACYLSTS 201: AGPVMGVLYI SSAKLAYCSD NPLSYKNGDQ TEWSYYKVVI PLHQLKAVNP SASIVNPAEK YIQVISVDNH EFWFMGFLNY DGAVTSLQDS LQAGALRSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)