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AT2G22450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : riboflavin biosynthesis protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
riboflavin biosynthesis protein, putative; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), Riboflavin biosynthesis protein RibA (InterPro:IPR016299), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 11284 Blast hits to 11282 proteins in 2317 species: Archae - 207; Bacteria - 6851; Metazoa - 1; Fungi - 301; Plants - 119; Viruses - 0; Other Eukaryotes - 3805 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22450-MONOMERBRENDA:4.1.99.12EC:4.1.99.12eggNOG:COG0108eggNOG:COG0807eggNOG:KOG1284EMBL:AC006592
EMBL:AK228961EMBL:BT011627EMBL:BT012273EMBL:CP002685EnsemblPlants:AT2G22450EnsemblPlants:AT2G22450.1entrez:816777
Gene3D:3.90.870.10GeneID:816777Genevisible:Q6NLQ7GO:GO:0005525GO:GO:0008686GO:GO:0009231GO:GO:0009507
GO:GO:0016787GO:GO:0046872Gramene:AT2G22450.1gramene_pathway:3.5.4.25gramene_pathway:4.1.99.12gramene_pathway:RIBOSYN2-PWYHAMAP:MF_00180
hmmpanther:PTHR21327hmmpanther:PTHR21327:SF11HOGENOM:HOG000115440InParanoid:Q6NLQ7InterPro:IPR000422InterPro:IPR017945InterPro:IPR032677
KEGG:00740+3.5.4.25KEGG:00740+4.1.99.12KEGG:ath:AT2G22450KO:K14652OMA:SYETAFTPaxDb:Q6NLQ7Pfam:PF00925
Pfam:PF00926Pfam:Q6NLQ7PhylomeDB:Q6NLQ7PIR:G84612PRIDE:Q6NLQ7PRO:PR:Q6NLQ7ProMEX:Q6NLQ7
ProteinModelPortal:Q6NLQ7Proteomes:UP000006548RefSeq:NP_179831.2SMR:Q6NLQ7STRING:3702.AT2G22450.1SUPFAM:0052081SUPFAM:SSF142695
SUPFAM:SSF55821TAIR:AT2G22450TIGRfam:TIGR00506TIGRFAMs:TIGR00506UniGene:At.39435UniPathway:UPA00275UniProt:Q6NLQ7
Coordinates (TAIR10) chr2:+:9530654..9532691
Molecular Weight (calculated) 52202.90 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.22
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLTLRCDS THLLPSRDVV KGTKPFGTSL VYPRIISKKF NVRMRVIPEE GDVFSSSKSN GSSMGIELQP DLVSFGTLAA EMIPTTMDSP EVEDEEFDLD
101: RPTDGFASIP QAIEDIRHGK MVVVVDDEDR ENEGDLIMAA SLATPEAMAF VVKHGTGIVC VSMKGEDLER LELPLMVTRK DNEEKLRTAF TVSVDAKKGT
201: STGVSARDRA QTILTLASKD SKPEDFNRPG HIFPLRYREG GVLKRAGHTE ASVDLTVLAG LEPVSVLCEI VDDDGSMARL PRLRQFAQEN NLKLISIADL
301: IRYRRKRERL VEFTAVAPIP TMWGPFKAHC FKSLLDGVEH IAMVKGEIGD GKDILVRVHA ECITDDIFGN SSGGKQLAIA MRLIEENGRG VFVYLRGPES
401: KGIDLSHKPR TYNTNSDQAE GVSFPVASRE YGIGAQILRD LGVREMKVMT NNPAHYVGLK GYGLSISGKV PLITTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)