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AT2G22370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:2122eggNOG:ENOG410ISJXeggNOG:ENOG410ZUU9EMBL:AC006592
EMBL:BT029378EMBL:CP002685EnsemblPlants:AT2G22370EnsemblPlants:AT2G22370.1
entrez:816769GeneID:816769Genevisible:Q9SJZ6GO:GO:0001104
GO:GO:0006357GO:GO:0006369GO:GO:0010219GO:GO:0016592
GO:GO:0045892GO:GO:0048440GO:GO:0048441GO:GO:0048442
GO:GO:0048443GO:GO:0048510GO:GO:0048833GO:GO:0070847
Gramene:AT2G22370.1hmmpanther:PTHR13321hmmpanther:PTHR13321:SF2HOGENOM:HOG000005666
InParanoid:Q9SJZ6IntAct:Q9SJZ6KEGG:ath:AT2G22370KO:K15135
OMA:EPTWTVKPaxDb:Q9SJZ6Pfam:Q9SJZ6PhylomeDB:Q9SJZ6
PIR:H84611PRIDE:Q9SJZ6PRO:PR:Q9SJZ6ProteinModelPortal:Q9SJZ6
Proteomes:UP000006548RefSeq:NP_565534.1STRING:3702.AT2G22370.1TAIR:AT2G22370
UniGene:At.28136UniProt:Q9SJZ6
Coordinates (TAIR10) chr2:-:9501019..9502078
Molecular Weight (calculated) 23366.40 Da
IEP (calculated) 6.50
GRAVY (calculated) 0.25
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMECVVQGI IETQHVEALE ILLQGLCGVQ RERLRVHELC LRSGPNLGVV SSEVRLLCDL DQPEPTWTVK HVGGAMRGAG ADQISVLVRN MIESKVSKNA
101: LRMFYALGYK LDHELLKVGF AFHFQRTAHI SVSVSSVNKM PKVHAIDEAV PVTPGMQIVD VTAPATSENY SEVAAAVSSF CEFLAPLVHL SKPSISTGVV
201: PTAAAAAASL MSDGGGTTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)