suba logo
AT2G22300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : signal responsive 1
Curator
Summary (TAIR10)
Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.
Computational
Description (TAIR10)
signal responsive 1 (SR1); FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: response to biotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 5346 Blast hits to 4463 proteins in 355 species: Archae - 34; Bacteria - 421; Metazoa - 3055; Fungi - 454; Plants - 566; Viruses - 42; Other Eukaryotes - 774 (source: NCBI BLink).
Protein Annotations
BioGrid:2115DIP:DIP-59735NeggNOG:ENOG410IUMHeggNOG:ENOG4112848EMBL:AC007168EMBL:AF303397EMBL:AF506697
EMBL:AY510025EMBL:BT002459EMBL:CP002685EnsemblPlants:AT2G22300EnsemblPlants:AT2G22300.1EnsemblPlants:AT2G22300.2entrez:816762
Gene3D:1.25.40.20Gene3D:2.60.40.10GeneID:816762Genevisible:Q8GSA7GO:GO:0001077GO:GO:0005634GO:GO:0006355
GO:GO:0006366GO:GO:0009409GO:GO:0010150GO:GO:0042742GO:GO:0043565GO:GO:0045944GO:GO:0050832
Gramene:AT2G22300.1Gramene:AT2G22300.2hmmpanther:PTHR23335HOGENOM:HOG000240102InParanoid:Q8GSA7InterPro:IPR000048InterPro:IPR002110
InterPro:IPR002909InterPro:IPR005559InterPro:IPR013783InterPro:IPR014756InterPro:IPR020683InterPro:IPR027417iPTMnet:Q8GSA7
KEGG:ath:AT2G22300MINT:MINT-8064185OMA:DETESAYPaxDb:Q8GSA7Pfam:PF00612Pfam:PF01833Pfam:PF03859
Pfam:Q8GSA7Pfscan:PS50088Pfscan:PS50096Pfscan:PS50297Pfscan:PS51437PhylomeDB:Q8GSA7PIR:A84611
PRIDE:Q8GSA7PRO:PR:Q8GSA7PROSITE:PS50088PROSITE:PS50096PROSITE:PS50297PROSITE:PS51437ProteinModelPortal:Q8GSA7
Proteomes:UP000006548RefSeq:NP_001118361.1RefSeq:NP_850023.1SMART:SM00015SMART:SM01076SMR:Q8GSA7STRING:3702.AT2G22300.1
SUPFAM:SSF48403SUPFAM:SSF52540SUPFAM:SSF81296TAIR:AT2G22300tair10-symbols:CAMTA3tair10-symbols:SR1UniGene:At.48505
UniGene:At.71036UniProt:Q8GSA7
Coordinates (TAIR10) chr2:+:9471599..9476472
Molecular Weight (calculated) 116118.00 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.60
Length 1032 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAEARRFSPV HELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH
0101: CYYAHGQDNE NFQRRSYWLL QEELSHIVFV HYLEVKGSRV STSFNRMQRT EDAARSPQET GDALTSEHDG YASCSFNQND HSNHSQTTDS ASVNGFHSPE
0201: LEDAESAYNQ HGSSTAYSHQ ELQQPATGGN LTGFDPYYQI SLTPRDSYQK ELRTIPVTDS SIMVDKSKTI NSPGVTNGLK NRKSIDSQTW EEILGNCGSG
0301: VEALPLQPNS EHEVLDQILE SSFTMQDFAS LQESMVKSQN QELNSGLTSD RTVWFQGQDM ELNAISNLAS NEKAPYLSTM KQHLLHGALG EEGLKKMDSF
0401: NRWMSKELGD VGVIADANES FTQSSSRTYW EEVESEDGSN GHNSRRDMDG YVMSPSLSKE QLFSINDFSP SWAYVGCEVV VFVTGKFLKT REETEIGEWS
0501: CMFGQTEVPA DVISNGILQC VAPMHEAGRV PFYVTCSNRL ACSEVREFEY KVAESQVFDR EADDESTIDI LEARFVKLLC SKSENTSPVS GNDSDLSQLS
0601: EKISLLLFEN DDQLDQMLMN EISQENMKNN LLQEFLKESL HSWLLQKIAE GGKGPSVLDE GGQGVLHFAA SLGYNWALEP TIIAGVSVDF RDVNGWTALH
0701: WAAFFGRERI IGSLIALGAA PGTLTDPNPD FPSGSTPSDL AYANGHKGIA GYLSEYALRA HVSLLSLNDK NAETVEMAPS PSSSSLTDSL TAVRNATQAA
0801: ARIHQVFRAQ SFQKKQLKEF GDKKLGMSEE RALSMLAPKT HKSGRAHSDD SVQAAAIRIQ NKFRGYKGRK DYLITRQRII KIQAHVRGYQ FRKNYRKIIW
0901: SVGVLEKVIL RWRRKGAGLR GFKSEALVEK MQDGTEKEED DDFFKQGRKQ TEDRLQKALA RVKSMVQYPE ARDQYRRLLN VVNDIQESKV EKALENSEAT
1001: CFDDDDDLID IEALLEDDDT LMLPMSSSLW TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)