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AT2G22290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.854
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog H1D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPBIeggNOG:KOG0094EMBL:AC007168EMBL:CP002685EnsemblPlants:AT2G22290EnsemblPlants:AT2G22290.1entrez:816761
Gene3D:3.40.50.300GeneID:816761Genevisible:Q9SID8GO:GO:0000139GO:GO:0005525GO:GO:0005739GO:GO:0005794
GO:GO:0006890GO:GO:0006891GO:GO:0007264GO:GO:0015031GO:GO:0042147Gramene:AT2G22290.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF475HOGENOM:HOG000233968InParanoid:Q9SID8InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT2G22290
KO:K07893OMA:ASECNIMPaxDb:Q9SID8Pfam:PF00071Pfam:Q9SID8Pfscan:PS51419PhylomeDB:Q9SID8
PIR:H84610PRIDE:Q9SID8PRO:PR:Q9SID8PROSITE:PS51419ProteinModelPortal:Q9SID8Proteomes:UP000006548RefSeq:NP_179816.1
SMR:Q9SID8STRING:3702.AT2G22290.1SUPFAM:SSF52540TAIR:AT2G22290tair10-symbols:ATRAB-H1Dtair10-symbols:ATRAB6tair10-symbols:ATRABH1D
tair10-symbols:RAB-H1Dtair10-symbols:RABH1dTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.52865UniProt:Q9SID8
Coordinates (TAIR10) chr2:+:9466568..9467688
Molecular Weight (calculated) 23113.60 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.26
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VANRLSFLNT
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)