suba logo
AT2G22230.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24012629 (2013): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioesterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioesterase superfamily protein; FUNCTIONS IN: crotonoyl-[acyl-carrier-protein] hydratase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity; INVOLVED IN: defense response to fungus, incompatible interaction, fatty acid biosynthetic process; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114), Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (InterPro:IPR010084); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT5G10160.1); Has 7405 Blast hits to 7398 proteins in 2208 species: Archae - 0; Bacteria - 5424; Metazoa - 2; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1894 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22230-MONOMEReggNOG:COG0764eggNOG:ENOG410IF9KEMBL:AC007168EMBL:AY125519EMBL:BT002291EMBL:CP002685
EnsemblPlants:AT2G22230EnsemblPlants:AT2G22230.1entrez:816756Gene3D:3.10.129.10GeneID:816756GO:GO:0005618GO:GO:0006633
GO:GO:0009507GO:GO:0009534GO:GO:0009817GO:GO:0019171GO:GO:0047450Gramene:AT2G22230.1gramene_pathway:4.2.1.-
gramene_pathway:4.2.1.58gramene_pathway:FASYN-ELONG-PWYgramene_pathway:PWY-5971HAMAP:MF_00406hmmpanther:PTHR30272hmmpanther:PTHR30272:SF6IntAct:Q9SIE3
InterPro:IPR010084InterPro:IPR013114InterPro:IPR029069KEGG:00061+4.2.1.59KEGG:00780+4.2.1.59KEGG:ath:AT2G22230KO:K02372
OMA:AYKSENMPfam:PF07977PhylomeDB:Q9SIE3PIR:C84610Proteomes:UP000006548RefSeq:NP_565528.1SMR:Q9SIE3
STRING:3702.AT2G22230.1SUPFAM:SSF54637TAIR:AT2G22230TIGRfam:TIGR01750TIGRFAMs:TIGR01750UniGene:At.14447UniGene:At.48504
UniProt:Q9SIE3
Coordinates (TAIR10) chr2:+:9450042..9451427
Molecular Weight (calculated) 24243.60 Da
IEP (calculated) 8.75
GRAVY (calculated) 0.01
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTSNSVLF LSSDSLIHHH HHQPLHLSSS RSHSVSLPPN KRSNSLTLRC STNGDSTSTE KETPIELKFP AFPTVMDINQ IREILPHRFP FLLVDRVIEY
101: TPGVSAVAIK NVTINDNFFP GHFPERPIMP GVLMIEAMAQ VGGIVMLQPE VGGSQDNFFF AGIDKVRFRK PVIAGDTLVM RMTLLKFQKR FGLAKMEGKA
201: YVGGALVCEG EFMMVSAGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)