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AT2G22200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 5636 Blast hits to 5603 proteins in 247 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 5606; Viruses - 6; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:2107eggNOG:ENOG410JC5HeggNOG:ENOG4111XTCEMBL:AC007168EMBL:AY090378EMBL:AY143836EMBL:CP002685
EnsemblPlants:AT2G22200EnsemblPlants:AT2G22200.1entrez:816754Gene3D:3.30.730.10GeneID:816754Genevisible:Q9SIE4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT2G22200.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9
HOGENOM:HOG000239817InParanoid:Q9SIE4InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT2G22200OMA:LNHRRSTPaxDb:Q9SIE4
Pfam:PF00847Pfam:Q9SIE4Pfscan:PS51032PhylomeDB:Q9SIE4PIR:B84610PRIDE:Q9SIE4PRINTS:PR00367
PRO:PR:Q9SIE4PROSITE:PS51032ProteinModelPortal:Q9SIE4Proteomes:UP000006548RefSeq:NP_179810.1SMART:SM00380SMR:Q9SIE4
STRING:3702.AT2G22200.1SUPFAM:SSF54171TAIR:AT2G22200UniGene:At.39467UniProt:Q9SIE4
Coordinates (TAIR10) chr2:-:9443422..9444207
Molecular Weight (calculated) 29794.10 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.64
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: METASLSFPV PNTSFGVNKS MPLGLNQLTP YQIHQIQNQL NHRRSTISNL SPNRIRMKNL TPSTSKTKNL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF
101: ETAEKAALAY DQAAFQLRGD IAKLNFPNLI HEDMNPLPSS VDTKLQAICK SLRKTEEICS VSDQTKEYSV YSVSDKTELF LPKAELFLPK REHLETNELS
201: NESPRSDETS LLDESQAEYS SSDKTFLDFS DTEFEEIGSF GLRKFPSVEI DWDAISKLAN S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)