suba logo
AT2G22125.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 7763 Blast hits to 3084 proteins in 288 species: Archae - 8; Bacteria - 60; Metazoa - 1765; Fungi - 937; Plants - 4329; Viruses - 0; Other Eukaryotes - 664 (source: NCBI BLink).
Protein Annotations
DNASU:816747eggNOG:ENOG410ITMIeggNOG:ENOG410ZTP2EMBL:CP002685EnsemblPlants:AT2G22125EnsemblPlants:AT2G22125.1entrez:816747
Gene3D:1.25.10.10Gene3D:2.60.40.150GeneID:816747GO:GO:0005737GO:GO:0005886GO:GO:0009506GO:GO:0030244
GO:GO:0051211Gramene:AT2G22125.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF66InParanoid:F4IIM1InterPro:IPR000008InterPro:IPR000225
InterPro:IPR011989InterPro:IPR016024iPTMnet:F4IIM1KEGG:ath:AT2G22125ncoils:CoilOMA:IFPITHVPaxDb:F4IIM1
Pfam:PF00168Pfam:PF00514Pfscan:PS50004Pfscan:PS50176PRIDE:F4IIM1PROSITE:PS50004PROSITE:PS50176
ProteinModelPortal:F4IIM1Proteomes:UP000006548RefSeq:NP_179803.4SMART:SM00185SMART:SM00239STRING:3702.AT2G22125.1SUPFAM:SSF48371
SUPFAM:SSF49562TAIR:AT2G22125tair10-symbols:CSI1UniGene:At.24341UniProt:F4IIM1
Coordinates (TAIR10) chr2:+:9406793..9414223
Molecular Weight (calculated) 230719.00 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.10
Length 2150 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTSALGWRFP STNGNGLAPS DTERNGDMKM HDSEPPTPHS TTKMSLRDRT TSMEDPDGTL ASVAQCIEQL RQGSSSAQER EYCLKQLLDL IEMRENAFSA
0101: VGSHSQAVPV LVSLLRSGSV GVKIQAATVL GSLCKENELR VKVLLGGCIP PLLGLLKSSS VEGQIAAAKT IYAVSEGGVK DHVGSKIFST EGVVPVLWDQ
0201: LRSGNKKGEV DGLLTGALKN LSSTTEGFWS ETIRAGGVDV LVKLLTSGQS STLSNVCFLL ACMMMEDASV CSSVLTADIT KQLLKLLGSG NEAPVRAEAA
0301: AALKSLSAQS KEAKREIANS NGIPVLINAT IAPSKEFMQG EYAQALQENA MCALANISGG LSYVISSLGQ SLESCSSPAQ TADTLGALAS ALMIYDGKAE
0401: TTRASDPLVV EQTLLKQFKP RLPFLVQERT IEALASLYGN SILSVKLSNS DAKRLLVGLI TMAVNEVQDE LVKALLMLCN HEGSLWQALQ GREGIQLLIS
0501: LLGLSSEQQQ ECAVALLCLL SNENDESKWA ITAAGGIPPL VQILETGSAK AREDSATILR NLCNHSEDIR ACVESADAVP ALLWLLKNGS PNGKEIAAKT
0601: LNHLIHKSDT ATISQLTALL TSDLPESKIY VLDALKSMLS VVPFNDMLRE GSASNDAIET MIKLMSSGKE ETQANSASAL AAIFQSRKDL RESALALKTL
0701: LSAIKLLNVD SERILVESCR CLAAILLSIK ENRDVAISAR EALPTIVSLA NSSVLEVAEQ GMCALANLIL DSEVSEKVIV EDIILSATRI LREGTVSGKT
0801: LAAAAIARLL SRRRIDSALT DSVNRAGTVL TLVSLLESAD GRSDAISEAL DALAIFSRSG ANGNVKPAWA VLAESPNSMA PIVSSIVSVA NPSLQDKAIE
0901: VLSRLCRDQP IVLGNMVNNA RDCVSSIAKR VINTRDPKIK IGGAAIIICA AKVDDQKMIE NLNETQLCAK FVQALVGILD SVQDQEKDEK DKICICIHPK
1001: EKEEDEEEEA TENREGSTGA TVISGDNLAI WLLSVLSCHD EKSRAVILES EGIELITDRI GNRFLQADNG EDANIWVCAL LLAILFQDRE ITRAHATMKA
1101: VPVLSNLVKS EEYADRYFAA QALASLVCNG SRGTLLSVAN SGAAAGFISL LGCSDDDIKE LLQLSQEFTL VRYPDQVALE RLFRVEDIRV GATSRKAIPL
1201: LVELLKPIPD RPGAPLLSLN LLTQLAGDCP QNMIVMVESG ALEGLSKYLS LGPQDEQEEA ATGLLGILFS SAEIRRHESA FGAVSQLVAV LRLGGRGARY
1301: SAAKALDSLF TADHIRNAES SRQAVQPLVE ILNTGSEREQ HAAIAALVRL LSDNPSRALA VADVEMNAVD VLCRILSSNY TMELKGDAAE LCYVLFANTR
1401: IRSTVAAARC VEPLVSLLVT EFSPAQHSVV RALDKLVDDE QLAELVAAHG AVVPLVGLLY GKNYVLHEAI SRALVKLGKD RPACKLEMVK AGVIDCVLDI
1501: LHEAPDFLCA AFSELLRILT NNATIAKGQS AAKVVEPLFH LLTRLEFGAD GQHSALQVLV NILEHPQCRA DYTLTPHQVI EPLIPLLESP SPAVQQLAAE
1601: LLSHLLYEEH LQKDPLTQLA IGPLIHVLGS GIHLLQQRAV KALVSIALTW PNEIAKEGGV SELSKVILQA DPSLSNVLWE SAASILVIIL QFSSEFYLEV
1701: PVAVLVRLLR SASENTVVGA LNALLVLESD DGTSAESMAE SGAIEALLDL LRSHQCEDTA ARLLEVLLNN VKIRDSKATK TAILPLSQYL LDPQTQAQQA
1801: RLLATLALGD LFQNEALARS TDAASACRAL VNVLEEQPTE EMKVVAICAL QNLVMYSRSN KRAVAEAGGV QVVLDLISSS DPETSVQAAM FVKLLFSNHT
1901: VQEYASSETV RAITAAIEKD LWATGTVNDE YLKALNSLFN NFPRLRATEP ATLSIPHLVT SLKTGSEATQ EAALDALFLL RQAWSACPAE VSRAQSVAAA
2001: DAIPLLQYLI QSGPPRFQEK AEFLLQCLPG TLVVTIKRGN NMKQSVGNPS VFCKITLGNN PPRQTKVIST GPNPEWDESF SWSFESPPKG QKLHISCKNK
2101: SKMGKSSFGK VTIQIDRVVM LGAVAGEYSL LPESKSGPRN LEIEFQWSNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)