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AT2G22100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 55861 Blast hits to 32453 proteins in 1538 species: Archae - 93; Bacteria - 4088; Metazoa - 24471; Fungi - 5728; Plants - 4956; Viruses - 222; Other Eukaryotes - 16303 (source: NCBI BLink).
Protein Annotations
BioGrid:2098eggNOG:COG0724eggNOG:KOG0118EMBL:AC007232EMBL:AY088233EMBL:CP002685EnsemblPlants:AT2G22100
EnsemblPlants:AT2G22100.1entrez:816745Gene3D:3.30.70.330GeneID:816745Genevisible:Q9SHZ5GO:GO:0000166GO:GO:0003723
GO:GO:0005634Gramene:AT2G22100.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF391InParanoid:Q9SHZ5InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT2G22100ncoils:CoilOMA:GERAWYLPaxDb:Q9SHZ5Pfam:PF00076Pfam:Q9SHZ5Pfscan:PS50102
PhylomeDB:Q9SHZ5PIR:A84609PRIDE:Q9SHZ5PRO:PR:Q9SHZ5PROSITE:PS50102ProteinModelPortal:Q9SHZ5Proteomes:UP000006548
RefSeq:NP_565526.1SMART:SM00360SMR:Q9SHZ5STRING:3702.AT2G22100.1SUPFAM:SSF54928TAIR:AT2G22100UniGene:At.39482
UniProt:Q9SHZ5
Coordinates (TAIR10) chr2:-:9392397..9393545
Molecular Weight (calculated) 42885.90 Da
IEP (calculated) 9.74
GRAVY (calculated) -1.03
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEGEERKK EKKEKKERKE RKRREAEELA VREKKISKKH KSKSKEEEKP EKSKKKSKKY EEVEEEEKSP SPSPSPKKSK ESKKKHKRSS DESEEIVDSK
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)