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AT2G22090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
Computational
Description (TAIR10)
UBA1A; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 13884 Blast hits to 11620 proteins in 712 species: Archae - 0; Bacteria - 872; Metazoa - 7516; Fungi - 1398; Plants - 2946; Viruses - 0; Other Eukaryotes - 1152 (source: NCBI BLink).
Protein Annotations
BioGrid:2097eggNOG:COG0724eggNOG:KOG0118EMBL:AC007232
EMBL:AJ439403EMBL:AK175749EMBL:AK175784EMBL:AK176364
EMBL:AY063782EMBL:AY088576EMBL:AY117273EMBL:CP002685
EnsemblPlants:AT2G22090EnsemblPlants:AT2G22090.1entrez:816744ExpressionAtlas:Q9SHZ6
Gene3D:3.30.70.330GeneID:816744Genevisible:Q9SHZ6GO:GO:0000166
GO:GO:0003723GO:GO:0005634hmmpanther:PTHR24012hmmpanther:PTHR24012:SF397
HOGENOM:HOG000090607IntAct:Q9SHZ6InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9SHZ6KEGG:ath:AT2G22090PaxDb:Q9SHZ6Pfam:PF00076
Pfam:Q9SHZ6Pfscan:PS50102PIR:H84608PRIDE:Q9SHZ6
PRO:PR:Q9SHZ6PROSITE:PS50102ProteinModelPortal:Q9SHZ6Proteomes:UP000006548
RefSeq:NP_565525.1SMART:SM00360SMR:Q9SHZ6STRING:3702.AT2G22090.2
SUPFAM:SSF54928TAIR:AT2G22090tair10-symbols:UBA1AUniGene:At.25483
UniProt:Q9SHZ6
Coordinates (TAIR10) chr2:-:9388571..9390450
Molecular Weight (calculated) 36152.50 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.52
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)