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AT2G21870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Predictors External Curations
AmiGO : mitochondrion 11743115
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 12681508
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 15276431
AmiGO : nucleus 15496452
AmiGO : plastid 18431481
SwissProt : mitochondrion 16381842
TAIR : plastid 16618929
TAIR : mitochondrion 15276431
TAIR : mitochondrion 16618929
TAIR : plastid 18431481
TAIR : nucleus 15496452
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : copper ion binding;cobalt ion binding;zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MALE GAMETOPHYTE DEFECTIVE 1 (MGP1); FUNCTIONS IN: copper ion binding, cobalt ion binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; Has 118 Blast hits to 117 proteins in 48 species: Archae - 2; Bacteria - 17; Metazoa - 24; Fungi - 3; Plants - 52; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
BioGrid:2076eggNOG:ENOG410IHTNeggNOG:ENOG410Y0FVEMBL:AC007019
EMBL:AY046020EMBL:AY079312EMBL:AY087107EMBL:CP002685
EnsemblPlants:AT2G21870EnsemblPlants:AT2G21870.1entrez:816723ExpressionAtlas:Q9SJ12
GeneID:816723Genevisible:Q9SJ12GO:GO:0005507GO:GO:0005730
GO:GO:0005739GO:GO:0005753GO:GO:0008270GO:GO:0009507
GO:GO:0009555GO:GO:0015992GO:GO:0016020GO:GO:0045263
GO:GO:0050897hmmpanther:PTHR36013HOGENOM:HOG000238761InParanoid:Q9SJ12
IntAct:Q9SJ12InterPro:IPR031432KEGG:ath:AT2G21870MINT:MINT-4330244
ncoils:CoilOMA:TFKGDEMPaxDb:Q9SJ12Pfam:PF15704
Pfam:Q9SJ12PhylomeDB:Q9SJ12PIR:B84606PRIDE:Q9SJ12
PRO:PR:Q9SJ12ProteinModelPortal:Q9SJ12Proteomes:UP000006548RefSeq:NP_179778.1
STRING:3702.AT2G21870.1TAIR:AT2G21870tair10-symbols:MGP1UniGene:At.24983
UniProt:Q9SJ12
Coordinates (TAIR10) chr2:-:9320456..9322618
Molecular Weight (calculated) 27598.40 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.66
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYASRFLSR SKQLQGGLVI LQQQHAIPVR AFAKEAARPT FKGDEMLKGV FFDIKNKFQA AVDILRKEKI TLDPEDPAAV KQYANVMKTI RQKADMFSES
101: QRIKHDIDTE TQDIPDARAY LLKLQEIRTR RGLTDELGAE AMMFEALEKV EKDIKKPLLR SDKKGMDLLV AEFEKGNKKL GIRKEDLPKY EENLELSMAK
201: AQLDELKSDA VEAMESQKKK EEFQDEEMPD VKSLDIRNFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)